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Report for CCDS88375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88375.1 Public Mus musculus 12 Ift43 23 108 98 CCDS HistoryNCBI Gene:76411Re-query CCDS DB by CCDS ID:88375.1Re-query CCDS DB by GeneID:76411See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222821.1 ENSMUSP00000152079.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222821.1Link to Ensembl Protein Viewer:ENSMUSP00000152079.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222821Re-query CCDS DB by Protein ID:ENSMUSP00000152079
Original member Current member NCBI NM_001199843.1 NP_001186772.1 Accepted alive Link to Nucleotide Sequence:NM_001199843.1Link to Protein Sequence:NP_001186772.1Re-query CCDS DB by Nucleotide ID:NM_001199843Re-query CCDS DB by Protein ID:NP_001186772Link to BLAST:NP_001186772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186772.1 206 Q9DA69-1 206 100% 0 0

Chromosomal Locations for CCDS 88375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86082587 86082640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86085094 86085186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86111611 86111675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86138793 86138825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86140052 86140095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86161149 86161221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86161452 86161527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86161987 86162049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86162178 86162297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGACGATTTACTGGACCTGGGCGAGGAGAGACGTCGCAGCTCGGCCACCTCCGGGGCCAAGATGGGAC
GCCGGGCTCATCAGGAGTCGACTCAGGCTGAGAATTACTTAAACAGCAAGAATTCTTCACTGACTCAGAC
TGGAGAGGCTCCCCCACCGAAACCACCTCGAAGGCAGGGAGGCTGGGCGGATGACTCCATGAAGATGGCG
AAATTGGGAAAGAAAGTTTCTGAAGAGATGGAAGATCACCGCCTCCGACAGCAGAACCTGATGGGGTCAG
ACGACGACGATATTCCTGTGATCCCAGACCTGGAAGATGTGCAGGAGGAAGACTTTGTGCTACAGGTGGC
GTCTCCTCCAAGTATCCAGGTAAACCGAGTGATGACCTACCGTGACCTGGACAATGACCTCATGAAGTAC
TCGGCCTTTCAGACTTTGGATGGAGAAATTGACCTGAAACTCCTCACCAAAGTGCTGGCCCCAGAGCATG
AAGTGCGAGAGGATGATGTGGGCTGGGACTGGGACCATCTGTACACCGAGGTGTCCTCAGAGCTCCTCAC
TGAGTGGGACCTGCTGCGGGCAGAGAAGGAGGATCCTGTGGGACCATCTAGGTACATCTGA

Translation (206 aa):
MDDLLDLGEERRRSSATSGAKMGRRAHQESTQAENYLNSKNSSLTQTGEAPPPKPPRRQGGWADDSMKMA
KLGKKVSEEMEDHRLRQQNLMGSDDDDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKY
SAFQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEWDLLRAEKEDPVGPSRYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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