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Report for CCDS88417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88417.1 Public Mus musculus 13 Cdk13 23 108 98 CCDS HistoryNCBI Gene:69562Re-query CCDS DB by CCDS ID:88417.1Re-query CCDS DB by GeneID:69562See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223490.1 ENSMUSP00000152820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223490.1Link to Ensembl Protein Viewer:ENSMUSP00000152820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223490Re-query CCDS DB by Protein ID:ENSMUSP00000152820
Original member Current member NCBI NM_027118.1 NP_081394.1 Accepted alive Link to Nucleotide Sequence:NM_027118.1Link to Protein Sequence:NP_081394.1Re-query CCDS DB by Nucleotide ID:NM_027118Re-query CCDS DB by Protein ID:NP_081394Link to BLAST:NP_081394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081394.1 1451 Q69ZA1-2 1451 100% 0 0

Chromosomal Locations for CCDS 88417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 17718061 17718911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17719356 17719625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17721088 17721293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17727120 17727251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17728067 17728183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17738917 17738994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17739091 17739192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17750257 17750313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17751671 17751860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17763104 17763274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17764954 17765093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17766436 17766606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17772301 17772957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 17803438 17804651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4356 nt):
ATGCCGAGTAGCTCGGACACGGCGCTGGGGGGAGGCGGGGGCCTGAGCTGGGCCGAGAAGAAGTTGGAGG
AGCGCCGCAAGCGGAGGCGATTCCTGTCCCCTCAGCAGCCGCCGCTGCTGTTGCCGCTCCTGCAGCCGCA
GCTCCTGCAACCGCCGCCGCCCCCGCCGCCTCTGCTCTTCCTGGCTGCCCCCGGCGCGGCCGCCGCCGCA
GCCGCCGCCGCCGCGGCCTCCTCCTCTTGCTTCAGCCCGGGCCCTCCTCTGGAGGTCAAGCGGCTGGCGA
GAGGCAAGAGGCGCCCCGGAGGGCGGCAGAAGCGGCGCCGCGGGCCCCGCGCCGGGCAGGAGGCGGAGAA
GCGCCGGGTCTTCTCGCTGCCCCAGCCGCAGCAGGACGGCGGTGGCGGTGCCAGTAGCGGCGGGGGTGTG
ACCCCGCTGGTGGAGTACGAGGATGTGAGCTCCCAGTCCGAGCAGGGGCTGCTGCTGGGGGGCGCCAGCG
CGGCAACGGCGGCGACGGCTGCCGGGGGAACGGGGGGCAACGGCGGGAGTCCGGCCTCCTCCTCCGGCAC
GCAGAGGCGCGCGGAGGGGTCGGAGCGCAGGCCGCGCCGGGACCGCCGCAGCAGCAGCGGCCGCAGCAAG
GAGCGCCACCGCGAGCACCGGCGGCGGGACGGGACGCGCAGCGGCAGCGAGGCCTCAAAGGCCCGCAGCC
GCCACGGACACAGCGGCGAGGAGCGGGCGGAGGCCGCCAAGAGCGGCAGCAGCAGCAGCAGCGGCGGCCG
CCGCAAGAGCGCGTCGGCTACGTCCAGCAGCAGTAGCAGCCGCAAGGACCGGGACCTCAAGGCCCACCGC
AGCCGGACTAAGTCGTCCAAGGAACCGCCCTCGGCCTACAAGGAGCCGCCCAAGGCCTACCGGGAGGACA
AGAGCGAGCCGAAGGCCTACAGGCGGCGGCAGCGGTCCCTGAGCCCGCTGGGAGGCCGGGACGAAAGCCC
GGTGTCCCACAGGGCCTCGCAGAGCCTTCGGAGCCGCAAGTCCCCCAGTCCGGCGGGAGGTGGCAGCAGT
CCTTATTCCCGGCGGCTGCCGCGCTCCCCGAGCCCCTATAGCCGGCGCCGCTCGCCCAGCTACAGCCGCC
ACAGCTCCTACGAGCGGGGCGGCGACGTATCCCCCAGCCCGTACAGCAGCAGCAGCTGGCGGCGCTCGCG
CAGCCCCTACAGCCCAGTACTCAGACGATCTGCCAAATCCCGAAGCAGAAGCCCATATTCATCTAGGCAC
TCAAGATCTCGGAGCAGGCACAGATTGTCTAGATCAAGAAGTCGTCATTCAAGCATTTCTCCTAGCACAC
TAACTCTGAAGAGTAGCTTGGCAGCTGAATTGAACAAGAATAAAAAGGCACGAGCTGCAGAGGCAGCAAG
AGCTGCAGAGGCAGCAAAAGCTGCAGAAGCTGCTAAGGCTGCTGAAGCAGCTGCCAAAGCTGCCAAAGCC
TCAAATGCTTCTACACCTACCAAGGGGAACACAGAAACTGGTGCCAGTGTCTCACAGACAAACCATGTGA
AGGAAGTCAAAAAACTTAAAACTGAGCATGCACCTTCTCCTTCAAGTGGTGGGACCGTCAAAAGCGACAA
AGCAAAAACAAAGCCACCGCTTCAAGTAACAAAGGTAGACAATAATTTGACAGTAGAGAAAGCCACCAAG
AAAACAGTTGTTGGGAAGGAGAGTAAACCTGCTGCTACAAAGGAAGAACCAGTTTCCACTAAAGAGAAAA
GCAAGCCACTCACACCAAGCACAGGAGCCAAGGAGAAGGAGCAGCATGTGGCTTTAGTGACCTCTACGTT
ACCGCCATTACCTTTGCCTCCCATGCTGCCTGAAGATAAAGATGCTGATAGCTTAAGAGGCAACATTTCT
GTCAAAGCAGTTAAAAAAGAAGTAGAAAAGAAACTCCGATGTCTGCTTGCTGATTTACCATTGCCCCCTG
AGTTACCAGGAGGAGATGATCTTTCCAAGAGTCCAGAGGAGAAGAAAACAGCAGCACAGTTACATAGCAA
ACGAAGGCCTAAAATATGTGGGCCTCGCTATGGTGAAATCAAAGAAAAAGATATTGACTGGGGGAAACGC
TGCGTGGATAAATTTGATATCATCGGAATTATTGGAGAAGGTACTTATGGACAAGTTTACAAAGCCAGGG
ACAAAGACACGGGAGAAATGGTAGCCTTAAAGAAAGTACGTCTGGATAATGAAAAGGAGGGTTTCCCAAT
TACAGCAATTAGAGAAATTAAAATTCTTCGGCAACTCACCCACCAGAGTATCATCAATATGAAGGAAATC
GTGACTGATAAAGAAGATGCTTTGGATTTTAAGAAAGACAAAGGTGCATTTTACCTGGTGTTTGAATATA
TGGACCATGATCTGATGGGACTGCTGGAATCAGGCTTGGTTCATTTTAATGAAAACCATATAAAATCTTT
TATGAGACAGCTCATGGAAGGCCTGGATTATTGTCATAAGAAGAACTTTTTGCATAGAGATATTAAATGT
TCAAATATCCTTCTAAATAATAGAGGACAGATAAAACTTGCAGATTTTGGACTTGCTCGTTTATATAGCT
CAGAAGAAAGTCGCCCATATACTAACAAGGTCATTACTTTGTGGTATCGTCCACCTGAATTGCTCTTGGG
AGAAGAACGATATACACCAGCCATTGATGTATGGAGCTGTGGATGTATCCTTGGTGAACTCTTCACTAAA
AAACCTATATTTCAAGCAAACCAGGAACTTGCACAGCTAGAGCTAATAAGCCGTATATGTGGGAGTCCAT
GTCCTGCAGTGTGGCCTGATGTAATCAAACTGCCATATTTCAACACCATGAAACCAAAGAAGCAATATCG
GCGGAAGTTAAGAGAAGAATTTGTTTTCATCCCCGCAGCTGCACTCGACTTATTCGATTACATGCTTGCC
TTGGATCCCAGTAAGCGCTGCACTGCTGAGCAGGCTCTTCAGTGTGAGTTCCTGCGAGACGTGGAACCCT
CCAAAATGCCTCCACCAGACCTTCCTTTGTGGCAAGATTGTCATGAATTATGGAGTAAAAAGAGAAGAAG
ACAGAAACAGATGGGCATGACTGATGATCTTTCCACAATCAAAGCCCCTAGGAAGGACCTGTCTCTGGGC
TTAGATGACAGCAGAACTAACACACCCCAGGGTGTGCTGCCACCCGCACAGTTGAAATCTCAGAGCAACT
CAAATGTAGCACCTGGTGAAAAACAGACAGATCCATCAACACCACAACAGGAGTCTTCAAAATCATTGGG
AGGAGTTCAGCCTTCACAGACCATCCAGCCTAAAGTGGAAACTGATGCTGCCCAGGCTGCTGTGCAGAGT
GCATTTGCAGTCCTCTTGACTCAGTTAATAAAGGCCCAACAGTCCAAACAGAAAGATGCCATGCTAGAGG
AAAGGGAAAATGGATCAGGACATGAAGCTCCATTGCAACTCAGGCCTCCTCTAGAACCGAGCACTCCTGG
ATCCGGGCAAGATGACCTCATCCAGCACCAAGACAGGAGGATATTGGAGCTGACACCAGAACCAGACCGG
CCTCGAATTCTGCCTCCTGATCAACGGCCTCCTGAACCTCCTGAACCACCACCAGTTACTGAGGAGGACC
TAGATTATCGGACAGAAAACCAGCATGTTCCTACCACTAGTTCTTCATTAACTGACCCACATGCTGGAGT
GAAGGCAGCCCTCTTACAGCTGCTTGCTCAGCATCAGCCCCAGGATGATCCCAAAAGAGAAGGTGGTATC
GATTATCCCACAGGAGACACATATGTGCCCAGTTCAGACTATAAGGACAACTTTGGATCTTCTTTCTCTG
CCGCTCCTTACGTTAGCAGTGATGGTCTAGGAAGTAGCTCCGCTGCTGCACCATTGGAAGCACGTAGTTT
CATTGGAAACTCAGATATTCAGTCTCTGGATAACTACAGTACTGCTTCATCTCACACTGGTGGTCCACCT
CAAACTTCTGCCTTTACTGAGTCGTTTGCCAGTTCAGTAGCTGGATATGGAGACATTTACCTCAATGCTG
GTCCCATGTTGTTTAGTGGAGACAAGGACCATAGATTTGAATATAGCCATGGTCCTATCACAGTCCTCAC
AAACAGCAATGACCCTTCCACAGGGCCAGAGAGTACTCATCCCTTGCCAGCAAAGATGCACAACTATAAC
TATGGTGGTAACTTACAGGAAAATCCAGGTGGCCCTAGCCTCATGCATGGACAGACCTGGACTTCTCCTG
CCCAAGGACCTGGATATTCACAAGGATACAGGGGACACATTAGCACATCAGCTGGCAGAGGTCGAGGCAG
AGGGTTACCATACTGA

Translation (1451 aa):
MPSSSDTALGGGGGLSWAEKKLEERRKRRRFLSPQQPPLLLPLLQPQLLQPPPPPPPLLFLAAPGAAAAA
AAAAAASSSCFSPGPPLEVKRLARGKRRPGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGV
TPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGNGGSPASSSGTQRRAEGSERRPRRDRRSSSGRSK
ERHREHRRRDGTRSGSEASKARSRHGHSGEERAEAAKSGSSSSSGGRRKSASATSSSSSSRKDRDLKAHR
SRTKSSKEPPSAYKEPPKAYREDKSEPKAYRRRQRSLSPLGGRDESPVSHRASQSLRSRKSPSPAGGGSS
PYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPVLRRSAKSRSRSPYSSRH
SRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAAEAARAAEAAKAAEAAKAAEAAAKAAKA
SNASTPTKGNTETGASVSQTNHVKEVKKLKTEHAPSPSSGGTVKSDKAKTKPPLQVTKVDNNLTVEKATK
KTVVGKESKPAATKEEPVSTKEKSKPLTPSTGAKEKEQHVALVTSTLPPLPLPPMLPEDKDADSLRGNIS
VKAVKKEVEKKLRCLLADLPLPPELPGGDDLSKSPEEKKTAAQLHSKRRPKICGPRYGEIKEKDIDWGKR
CVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEI
VTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKC
SNILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTK
KPIFQANQELAQLELISRICGSPCPAVWPDVIKLPYFNTMKPKKQYRRKLREEFVFIPAAALDLFDYMLA
LDPSKRCTAEQALQCEFLRDVEPSKMPPPDLPLWQDCHELWSKKRRRQKQMGMTDDLSTIKAPRKDLSLG
LDDSRTNTPQGVLPPAQLKSQSNSNVAPGEKQTDPSTPQQESSKSLGGVQPSQTIQPKVETDAAQAAVQS
AFAVLLTQLIKAQQSKQKDAMLEERENGSGHEAPLQLRPPLEPSTPGSGQDDLIQHQDRRILELTPEPDR
PRILPPDQRPPEPPEPPPVTEEDLDYRTENQHVPTTSSSLTDPHAGVKAALLQLLAQHQPQDDPKREGGI
DYPTGDTYVPSSDYKDNFGSSFSAAPYVSSDGLGSSSAAAPLEARSFIGNSDIQSLDNYSTASSHTGGPP
QTSAFTESFASSVAGYGDIYLNAGPMLFSGDKDHRFEYSHGPITVLTNSNDPSTGPESTHPLPAKMHNYN
YGGNLQENPGGPSLMHGQTWTSPAQGPGYSQGYRGHISTSAGRGRGRGLPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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