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Report for CCDS88581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88581.1 Public Mus musculus 14 Ngly1 23 108 98 CCDS HistoryNCBI Gene:59007Re-query CCDS DB by CCDS ID:88581.1Re-query CCDS DB by GeneID:59007See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224656.1 ENSMUSP00000152998.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224656.1Link to Ensembl Protein Viewer:ENSMUSP00000152998.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224656Re-query CCDS DB by Protein ID:ENSMUSP00000152998
Original member Current member NCBI NM_001362433.1 NP_001349362.1 Accepted alive Link to Nucleotide Sequence:NM_001362433.1Link to Protein Sequence:NP_001349362.1Re-query CCDS DB by Nucleotide ID:NM_001362433Re-query CCDS DB by Protein ID:NP_001349362Link to BLAST:NP_001349362.1

Chromosomal Locations for CCDS 88581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 16249367 16249497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16254642 16254756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16260564 16260800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16270475 16270640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16277799 16278021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16280693 16280814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16281740 16281885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16283363 16283473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16294488 16294673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16310314 16310491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 16310859 16311034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGCGTCGGCCACACTGGGCAGCTCGTCGAGCTCTGCGTCCCCGGCCGTGGCCGAGCTATGCCAGAACA
CCCCGGAGACCTTTCTGGAGGCCTCCAAGCTGCTGCTCACCTACGCCGACAACATCCTGAGAAACCCCAG
TGATGAAAAATACAGATCCATCCGTATTGGGAACACAGCGTTTTCTACTAGACTCTTGCCTGTCAGAGGA
GCTGTTGAGTGTTTATTTGAAATGGGCTTTGAAGAGGGAGAAACGCATCTTATCTTTCCTAAAAAAGCTT
CAGTGGAACAGCTACAGAAAATCCGTGATCTGATTGCCATAGAGAGAAGCAGCAGACTGGACGGATCCAG
TAAGAAGGTGCAATTCTCTCAGCACCCGGCTGCTGCCAAGCTTCCTCTGGAGCAGTCTGAAGATCCTGCT
GGGTTAATACGGCACTCAGGAAACCAAACAGGGCAGCTGCCAAGCCTACCCTCTGCTCCAATGGTTGTTG
GTGATTCAACCATCTTAAAAGTTCTTCAGTCCAACATTCAGCATGTGCAGCTCTATGAAAACCCTGTCCT
CCAGGAGAAAGCATTGACTTGTATCCCAGTCAGTGAACTAAAAAGAAAAGCTCAAGAAAAGTTATTCAGA
GCTAGAAAGTTAGATAAAGGTACTAATGTAAGTGATGAGGACTTCCTTCTACTGGAGCTCCTACACTGGT
TTAAAGAGGAGTTTTTTCGCTGGGTGAATAACATTGTGTGCAGCAAATGTGGTGGAGAGACTAGATCTAG
AGATGAGGCATTGCTGCCCAATGATGATGAACTGAAGTGGGGTGCAAAGAATGTGGAGAATCATTACTGT
GATGCCTGCCAGTTGAGCAACCGCTTCCCAAGATATAACAACCCCGAGAAACTTTTGGAAACAAGATGTG
GACGCTGTGGTGAATGGGCCAATTGTTTTACTCTGTGCTGCCGTGCATTAGGGTTTGAAGCTCGATATGT
GTGGGATTACACAGACCATGTTTGGACAGAAGTCTATTCTCCATCTCAGCAGCGGTGGCTACACTGTGAT
GCATGTGAGGATGTCTGTGACAAACCCCTCCTTTATGAAATAGGATGGGGCAAGAAGCTTTCCTATATAA
TAGCATTCTCTAAAGATGAGGTAGTTGATGTCACCTGGCGATACTCTTGTAAACATGATGAGGTGATGTC
CAGGAGGACCAAGGTTAAAGAAGAGTTACTTCGAGAAACTATTAATGGGCTTAATAAGCAGAGAAAGGAG
ATTCTGTTCATCCCTTCTGAAAATGAAAAGATTTCTAAGCAGTTTCACCTCCGTTATGATATTGTGAGAG
ACCGTTACATTCGTGTCTCAGACAACAACATAAACATTTCTGGATGGGAGAATGGTGTGTGGAAAATGGA
ATCCATATTCAGAAAAGTCGAGAAAGACTGGAACATGGTTTATTTGGCCCGAAAAGAAGGATCATCTTTT
GCTTATATTTCCTGGAAGTTTGAATGTGGGTCAGCTGGTCTAAAAGTAGATACTGTTTCCATCCGCACAA
GTAGCCAAAGCTTTGAGTCTGGATCAGTGAGGTGGAAACTGCGATCTGAGACAGCTCAAGTCAACCTGCT
GGGAGATAAAAATCTACGTTCCTATAATGATTTTTCTGGTGCCACAGAGGTTACATTAGAAGCAGAGTTA
AGCAGAGGAGATGGAGACGTTGCTTGGCAACATACCCAACTGTTTAGACAAAGCTTAAATGACAGTGGAG
AAAATGGCTTGGAAATAATTATAACGTTCAATGACCTCTGA

Translation (596 aa):
MASATLGSSSSSASPAVAELCQNTPETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRG
AVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAIERSSRLDGSSKKVQFSQHPAAAKLPLEQSEDPA
GLIRHSGNQTGQLPSLPSAPMVVGDSTILKVLQSNIQHVQLYENPVLQEKALTCIPVSELKRKAQEKLFR
ARKLDKGTNVSDEDFLLLELLHWFKEEFFRWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYC
DACQLSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCD
ACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLNKQRKE
ILFIPSENEKISKQFHLRYDIVRDRYIRVSDNNINISGWENGVWKMESIFRKVEKDWNMVYLARKEGSSF
AYISWKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLRSYNDFSGATEVTLEAEL
SRGDGDVAWQHTQLFRQSLNDSGENGLEIIITFNDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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