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Report for CCDS88614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88614.1 Public Mus musculus 14 Phf7 23 108 98 CCDS HistoryNCBI Gene:71838Re-query CCDS DB by CCDS ID:88614.1Re-query CCDS DB by GeneID:71838See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228437.1 ENSMUSP00000154738.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228437.1Link to Ensembl Protein Viewer:ENSMUSP00000154738.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228437Re-query CCDS DB by Protein ID:ENSMUSP00000154738
Original member Current member NCBI NM_001360625.1 NP_001347554.1 Accepted alive Link to Nucleotide Sequence:NM_001360625.1Link to Protein Sequence:NP_001347554.1Re-query CCDS DB by Nucleotide ID:NM_001360625Re-query CCDS DB by Protein ID:NP_001347554Link to BLAST:NP_001347554.1

Chromosomal Locations for CCDS 88614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31238356 31238482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31239120 31239236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31239631 31239737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31241726 31241827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31248043 31248134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31248995 31249047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31249608 31249648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAAGACTTTAAAAGAAAAAAACAAACATCCAAGATTGAGAAAAACTATCAGGACTAAGAAGGTAACAC
AGAGGAAGCTGTCTTCAAGTCCTGTTTGCCTTCTATGCCTTCAAGAACCTGGTGATCCTGAAAAACTAGG
AGAATTTCTTCAGAAAGACAATCTTTGTGTCCATTATTTCTGTCTTATCCTGTCTAGCAGACTGCCTCAG
AAGGGCCAACCCAACAGAGGTCTCCATGGATTTATGCCTGAAGACATCAAAAGGGAGGCAGTACGGGCTT
CTAAGAAGAAATATGCCCACACATCAGCAAAGCACTTCTTCAAGTGTCCCCAGTGCAACAACCGAGAAGA
GTTCCCACAGGAGATGCTGAGGATGGGGATCCACATCCCAGACAGAGATGCTGCCTGGGAACTCGAGCCA
GGGGCTTTCTCCGAGTTGTATCAGCGCTATCGGCATTGTGATGCCCCCATCTGTCTGTATGAGCAAGGCA
GAGACAGCTTTGAGGATGAAGGACGGTGGCGCCTCATTTTGTGTGCTACGTGTGGATCCCATGGAACCCA
CCGGGACTGCTCCTCTCTTAGACCAAACAGCAAGAAATGGGAATGTAATGAGTGTTTGCCTGCTTCAACC
ACGAGTTAG

Translation (212 aa):
MKTLKEKNKHPRLRKTIRTKKVTQRKLSSSPVCLLCLQEPGDPEKLGEFLQKDNLCVHYFCLILSSRLPQ
KGQPNRGLHGFMPEDIKREAVRASKKKYAHTSAKHFFKCPQCNNREEFPQEMLRMGIHIPDRDAAWELEP
GAFSELYQRYRHCDAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPNSKKWECNECLPAST
TS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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