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Report for CCDS8866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8866.1 Public Homo sapiens 12 HOXC12 24 110 108 CCDS HistoryNCBI Gene:3228Re-query CCDS DB by CCDS ID:8866.1Re-query CCDS DB by GeneID:3228See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243103.4 ENSP00000243103.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000243103.4Link to Ensembl Protein Viewer:ENSP00000243103.3Re-query CCDS DB by Nucleotide ID:ENST00000243103Re-query CCDS DB by Protein ID:ENSP00000243103
Original member Current member NCBI NM_173860.3 NP_776272.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173860.3Link to Protein Sequence:NP_776272.1Re-query CCDS DB by Nucleotide ID:NM_173860Re-query CCDS DB by Protein ID:NP_776272Link to BLAST:NP_776272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776272.1 282 P31275 282 100% 0 0

Chromosomal Locations for CCDS 8866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53954930 53955539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53956328 53956566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGGCGAGCATAATCTCCTGAATCCCGGGTTTGTGGGGCCGCTGGTAAACATCCACACGGGAGACACCT
TCTACTTCCCCAACTTCCGCGCGTCCGGGGCGCAGCTTCCCGGGCTGCCTTCGCTGTCCTACCCACGCCG
CGACAACGTGTGCTCCCTGTCCTGGCCGTCGGCGGAGCCGTGCAATGGCTACCCGCAGCCCTACCTCGGC
AGCCCAGTGTCTCTCAACCCTCCCTTCGGCCGCACGTGCGAGCTGGCGCGCGTGGAGGACGGCAAGGGTT
ACTACCGCGAGCCGTGCGCCGAGGGTGGCGGCGGGGGCCTGAAGCGTGAGGAGCGCGGGCGCGACCCGGG
AGCCGGGCCCGGGGCAGCGCTGCTCCCGCTGGAGCCGTCGGGGCCGCCTGCGCTCGGCTTCAAGTACGAC
TACGCGGCGGGCGGCGGCGGTGGCGACGGCGGCGGCGGCGCAGGACCTCCGCACGACCCGCCCTCCTGCC
AGTCGCTGGAATCCGACTCCAGTTCGTCCCTGCTCAACGAGGGCAACAAGGGCGCCGGCGCAGGCGACCC
CGGCAGCTTGGTATCGCCGTTGAACCCCGGCGGCGGGCTCTCGGCCAGCGGCGCGCCCTGGTACCCGATC
AACAGCCGCTCTCGGAAGAAGCGCAAGCCCTATTCGAAGTTGCAACTGGCAGAGCTGGAGGGCGAGTTTC
TGGTCAACGAGTTCATCACACGCCAGCGCCGGAGGGAACTCTCAGACCGCTTGAATCTTAGTGACCAGCA
GGTCAAGATCTGGTTTCAGAACCGGAGAATGAAAAAGAAAAGACTTCTGTTGAGGGAGCAAGCTCTCTCC
TTCTTTTAA

Translation (282 aa):
MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPYLG
SPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAALLPLEPSGPPALGFKYD
YAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPI
NSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALS
FF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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