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Report for CCDS88732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88732.1 Public Mus musculus 15 Il7r 23 108 98 CCDS HistoryNCBI Gene:16197Re-query CCDS DB by CCDS ID:88732.1Re-query CCDS DB by GeneID:16197See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88732.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228782.1 ENSMUSP00000154530.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228782.1Link to Ensembl Protein Viewer:ENSMUSP00000154530.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228782Re-query CCDS DB by Protein ID:ENSMUSP00000154530
Original member Current member NCBI NM_001355680.1 NP_001342609.1 Accepted alive Link to Nucleotide Sequence:NM_001355680.1Link to Protein Sequence:NP_001342609.1Re-query CCDS DB by Nucleotide ID:NM_001355680Re-query CCDS DB by Protein ID:NP_001342609Link to BLAST:NP_001342609.1

Chromosomal Locations for CCDS 88732.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 9508357 9508358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9508724 9508782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9510166 9510259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9511111 9511279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9512885 9513042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9516335 9516492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9525054 9525192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9529661 9529742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGATGGCTCTGGGTAGAGCTTTCGCTATAGTTTTCTGCTTAATTCAAGCTGTTTCTGGAGAAAGTGGAA
ATGCCCAGGATGGAGACCTAGAAGATGCAGACGCGGACGATCACTCCTTCTGGTGCCACAGCCAGTTGGA
AGTGGATGGAAGTCAACATTTATTGACTTGTGCTTTTAATGACTCAGACATCAACACAGCTAATCTGGAA
TTTCAAATATGTGGGGCTCTTTTACGAGTGAAATGCCTAACTCTTAACAAGCTGCAAGATATATATTTTA
TAAAGACATCAGAATTCTTACTGATTGGTAGCAGCAATATATGTGTGAAGCTTGGACAAAAGAATTTAAC
TTGCAAAAATATGGCTATAAACACAATAGTTAAAGCCGAGGCTCCCTCTGACCTGAAAGTCGTTTATCGC
AAAGAAGCAAATGATTTTTTGGTGACATTTAATGCACCTCACTTGAAAAAGAAATATTTAAAAAAAGTAA
AGCATGATGTGGCCTACCGCCCAGCAAGGGGTGAAAGCAACTGGACGCATGTATCTTTATTCCACACAAG
AACAACAATCCCACAGAGAAAACTACGACCAAAAGCAATGTATGAAATCAAAGTCCGATCCATTCCCCAT
AACGATTACTTCAAAGGCTTCTGGAGCGAGTGGAGTCCAAGTTCTACCTTCGAAACTCCAGAACCCAAGA
ATCAAGGAGGATGGGATCCTGTCTTGCCAAGTGTCACCATTCTGAGTTTGTTCTCTGTGTTTTTGTTGGT
CATCTTAGCCCATGTGCTATGGAAAAAAAGGATTAAACCTGTCGTATGGCCTAGTCTCCCCGATCATAAG
AAAACTCTGGAACAACTATAG

Translation (286 aa):
MMALGRAFAIVFCLIQAVSGESGNAQDGDLEDADADDHSFWCHSQLEVDGSQHLLTCAFNDSDINTANLE
FQICGALLRVKCLTLNKLQDIYFIKTSEFLLIGSSNICVKLGQKNLTCKNMAINTIVKAEAPSDLKVVYR
KEANDFLVTFNAPHLKKKYLKKVKHDVAYRPARGESNWTHVSLFHTRTTIPQRKLRPKAMYEIKVRSIPH
NDYFKGFWSEWSPSSTFETPEPKNQGGWDPVLPSVTILSLFSVFLLVILAHVLWKKRIKPVVWPSLPDHK
KTLEQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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