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Report for CCDS8876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8876.1 Public Homo sapiens 12 NFE2 24 110 108 CCDS HistoryNCBI Gene:4778Re-query CCDS DB by CCDS ID:8876.1Re-query CCDS DB by GeneID:4778See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8876.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312156.8 ENSP00000312436.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312156.8Link to Ensembl Protein Viewer:ENSP00000312436.4Re-query CCDS DB by Nucleotide ID:ENST00000312156Re-query CCDS DB by Protein ID:ENSP00000312436
Original member Current member EBI ENST00000435572.7 ENSP00000397185.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435572.7Link to Ensembl Protein Viewer:ENSP00000397185.2Re-query CCDS DB by Nucleotide ID:ENST00000435572Re-query CCDS DB by Protein ID:ENSP00000397185
Original member Current member EBI ENST00000540264.2 ENSP00000439120.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540264.2Link to Ensembl Protein Viewer:ENSP00000439120.2Re-query CCDS DB by Nucleotide ID:ENST00000540264Re-query CCDS DB by Protein ID:ENSP00000439120
Original member Current member EBI ENST00000553070.5 ENSP00000447558.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553070.5Link to Ensembl Protein Viewer:ENSP00000447558.1Re-query CCDS DB by Nucleotide ID:ENST00000553070Re-query CCDS DB by Protein ID:ENSP00000447558
Original member Current member NCBI NM_001136023.3 NP_001129495.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136023.3Link to Protein Sequence:NP_001129495.1Re-query CCDS DB by Nucleotide ID:NM_001136023Re-query CCDS DB by Protein ID:NP_001129495Link to BLAST:NP_001129495.1
Original member Current member NCBI NM_001261461.2 NP_001248390.1 Accepted alive Link to Nucleotide Sequence:NM_001261461.2Link to Protein Sequence:NP_001248390.1Re-query CCDS DB by Nucleotide ID:NM_001261461Re-query CCDS DB by Protein ID:NP_001248390Link to BLAST:NP_001248390.1
Original member Current member NCBI NM_001400365.1 NP_001387294.1 Accepted alive Link to Nucleotide Sequence:NM_001400365.1Link to Protein Sequence:NP_001387294.1Re-query CCDS DB by Nucleotide ID:NM_001400365Re-query CCDS DB by Protein ID:NP_001387294Link to BLAST:NP_001387294.1
Original member Current member NCBI NM_006163.3 NP_006154.1 Accepted alive Link to Nucleotide Sequence:NM_006163.3Link to Protein Sequence:NP_006154.1Re-query CCDS DB by Nucleotide ID:NM_006163Re-query CCDS DB by Protein ID:NP_006154Link to BLAST:NP_006154.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129495.1 373 Q16621 373 100% 0 0
NP_001248390.1 373 Q16621 373 100% 0 0
NP_001387294.1 373 Q16621 373 100% 0 0
NP_006154.1 373 Q16621 373 100% 0 0

Chromosomal Locations for CCDS 8876.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54292374 54293381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54295135 54295248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGTCCCCGTGTCCTCCCCAGCAGAGCAGGAACAGGGTGATACAGCTGTCCACTTCAGAGCTAGGAGAGA
TGGAACTGACTTGGCAGGAGATCATGTCCATCACCGAGCTGCAGGGTCTGAATGCTCCAAGTGAGCCATC
ATTTGAGCCCCAAGCCCCAGCTCCATACCTTGGACCTCCACCACCCACAACTTACTGCCCCTGCTCAATC
CACCCAGATTCTGGCTTCCCACTTCCTCCACCACCTTATGAGCTCCCAGCATCCACATCCCATGTCCCAG
ATCCCCCATACTCCTATGGCAACATGGCCATACCAGTCTCCAAGCCACTGAGCCTCTCAGGCCTGCTCAG
TGAGCCGCTCCAAGACCCCTTAGCCCTCCTGGACATTGGGCTGCCAGCAGGGCCACCTAAGCCCCAAGAA
GACCCAGAATCCGACTCAGGATTATCCCTCAACTATAGCGATGCTGAATCTCTTGAGCTGGAGGGGACAG
AGGCTGGTCGGCGGCGCAGCGAATATGTAGAGATGTACCCAGTGGAGTACCCCTACTCACTCATGCCCAA
CTCCTTGGCCCACTCCAACTATACCTTGCCAGCTGCTGAGACCCCCTTGGCCTTAGAGCCCTCCTCAGGC
CCTGTGCGGGCTAAGCCCACTGCACGGGGGGAGGCAGGGAGTCGGGATGAACGTCGGGCCTTGGCCATGA
AGATTCCTTTTCCTACGGACAAGATTGTCAACTTGCCGGTAGATGACTTTAATGAGCTATTGGCAAGGTA
CCCGCTGACAGAGAGCCAGCTAGCGCTAGTCCGGGACATCCGACGACGGGGCAAAAACAAGGTGGCAGCC
CAGAACTGCCGCAAGAGGAAGCTGGAAACCATTGTGCAGCTGGAGCGGGAGCTGGAGCGGCTGACCAATG
AACGGGAGCGGCTTCTCAGGGCCCGCGGGGAGGCAGACCGGACCCTGGAGGTCATGCGCCAACAGCTGAC
AGAGCTGTACCGTGACATTTTCCAGCACCTTCGGGATGAATCAGGCAACAGCTACTCTCCTGAAGAGTAC
GCGCTGCAACAGGCTGCCGATGGGACCATCTTCCTTGTGCCCCGGGGGACCAAGATGGAGGCCACAGACT
GA

Translation (373 aa):
MSPCPPQQSRNRVIQLSTSELGEMELTWQEIMSITELQGLNAPSEPSFEPQAPAPYLGPPPPTTYCPCSI
HPDSGFPLPPPPYELPASTSHVPDPPYSYGNMAIPVSKPLSLSGLLSEPLQDPLALLDIGLPAGPPKPQE
DPESDSGLSLNYSDAESLELEGTEAGRRRSEYVEMYPVEYPYSLMPNSLAHSNYTLPAAETPLALEPSSG
PVRAKPTARGEAGSRDERRALAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAA
QNCRKRKLETIVQLERELERLTNERERLLRARGEADRTLEVMRQQLTELYRDIFQHLRDESGNSYSPEEY
ALQQAADGTIFLVPRGTKMEATD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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