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Report for CCDS8889.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8889.2 Public Homo sapiens 12 BLOC1S1 24 110 108 CCDS HistoryNCBI Gene:2647Re-query CCDS DB by CCDS ID:8889.2Re-query CCDS DB by GeneID:2647See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 8889.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data. The updated start codon is only conserved among primates, but it has a strong Kozak signal and is therefore expected to be used when encountered by the ribosome.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8889.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000548925.6 ENSP00000447537.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000548925.6Link to Ensembl Protein Viewer:ENSP00000447537.1Re-query CCDS DB by Nucleotide ID:ENST00000548925Re-query CCDS DB by Protein ID:ENSP00000447537
Original member Current member NCBI NM_001487.4 NP_001478.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001487.4Link to Protein Sequence:NP_001478.2Re-query CCDS DB by Nucleotide ID:NM_001487Re-query CCDS DB by Protein ID:NP_001478Link to BLAST:NP_001478.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001478.2 153 P78537-1 153 100% 0 0

Chromosomal Locations for CCDS 8889.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55716052 55716196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55716933 55717005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55719091 55719223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55719499 55719609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCCCCGGGGAGCCGAGGTGAGCGTTCCAGCTTCCGGAGCCGGAGGGGGCCCGGCGTACCCAGCCCCC
AGCCCGACGTGACCATGCTGTCCCGCCTCCTAAAAGAACACCAGGCCAAGCAGAATGAACGCAAGGAGCT
GCAGGAAAAGAGGAGGCGAGAGGCTATCACTGCAGCGACCTGCCTGACAGAAGCTTTGGTGGATCACCTC
AATGTGGGTGTGGCCCAGGCCTACATGAACCAGAGAAAGCTGGACCATGAGGTGAAGACCCTACAGGTCC
AGGCTGCCCAATTTGCCAAGCAGACAGGCCAGTGGATCGGAATGGTGGAGAACTTCAACCAGGCACTCAA
GGAAATTGGGGATGTGGAGAACTGGGCTCGGAGCATCGAGCTGGACATGCGCACCATTGCCACTGCACTG
GAATATGTCTACAAAGGGCAGCTGCAGTCTGCCCCTTCCTAG

Translation (153 aa):
MAPGSRGERSSFRSRRGPGVPSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHL
NVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATAL
EYVYKGQLQSAPS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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