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Report for CCDS89098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89098.1 Public Mus musculus 17 Ptchd4 23 108 98 CCDS HistoryNCBI Gene:627626Re-query CCDS DB by CCDS ID:89098.1Re-query CCDS DB by GeneID:627626See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232968.1 ENSMUSP00000156770.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232968.1Link to Ensembl Protein Viewer:ENSMUSP00000156770.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232968Re-query CCDS DB by Protein ID:ENSMUSP00000156770
Original member Current member NCBI NM_001355270.1 NP_001342199.1 Accepted alive Link to Nucleotide Sequence:NM_001355270.1Link to Protein Sequence:NP_001342199.1Re-query CCDS DB by Nucleotide ID:NM_001355270Re-query CCDS DB by Protein ID:NP_001342199Link to BLAST:NP_001342199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342199.1 904 B9EKX1 904 100% 0 0

Chromosomal Locations for CCDS 89098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42316641 42317240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42377160 42377640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42502282 42503915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGTGCTTTTTAAGACGGCCGGGAGCGCCTGCGAGCTGGATCTGGTGGAGGATGCTGCGGCAGGTGCTTC
GCAGAGGGCTCCAGTCATTCTGCCACAGGCTGGGCTTATGCGTGAGCCGGCACCCGGTCTTTTTCCTCAC
CGTGCCGGCAGTCCTGACCATCACCTTCGGCCTCAGCGCGCTCAACCGCTTCCAGACCGAGGGCGACCTG
GAGCGCCTGGTTGCTCCCAGCCACAGCCTGGCCAAGATCGAGCGCAGCCTAGCCAGCAGCCTTTTCCCCC
TGGACCAGTCCAAAAGCCAGCTCTATTCGGACTTACACACCCCTGGGAGGTATGGCAGGGTGATCCTCCT
CTCCTCACCCGGGGACAATATTTTGCTCCAGGCTGAGGGGATTCTGCAGACCCACCGAGCCGTGATGGAA
ATGAAGGTGAACCACAAGGGCTATAATTATACTTTTTCCCATCTGTGTGTGTTGAGAAATCAGGATAAGA
AATGCGTGCTGGATGATATTATTTCAGTGCTAGAGGATCTCAGGCAGGCTGCCGTCTCCAATAAGACAAC
AGCCAGGGTGCAAGTAAGGTATCCCAACACTAAATTAAAGGATGGGAGGAACAGTTTTATTGGACACCAG
CTGGGCGGGGTAGTGGAAGTGCCAAACAGCAAAGACCAGCGGGTCAAGTCAGCCAGAGCCATTCAAATCA
CCTACTACCTCCAGACCTATGGTTCTGCCACACAAGACCTCATAGGGGAGAAGTGGGAGAATGAGTTCTG
TAAGCTTATGAGGAAGCTCCAGGAGGAGCATCAAGACCTCCAACTGTACTCTCTGGCATCTTTTAGCCTC
TGGAGAGACTTTCATAAGACCAGCATCCTGACCAGAAGCAAGGTCCTGGTGAGCCTAGTGCTGATCCTGA
CCACGGCCACCCTGTCCAGCTCCATGAAGGACTGCTTGCGCAGTAAGCCCTTCCTGGGCCTCCTGGGGGT
GCTCACGGTCTGCATTTCCATCGCCACTGCAGCCGGGATATTCTTCATCACTGATGGGAAGTACAACTCA
ACCCTGCTGGGAATCCCTTTCTTCGCCATGGGTCATGGAACTAAAGGAGTATTTGAGCTTCTGTCTGGAT
GGCGGAGAACCAAAGAGAATTTACCCTTCAAAGACAGGGTAGCAGATGCCTACTCTGATGTGATGGTCAC
CTACACCATGACCAGTTCCCTGTACTTCATCACATTTGGTATGGGTGCCAGCCCCTTCACAAACATAGAG
GCCGTGAAGATCTTCTGTCAGAATATGTGTGTCTCTATTCTGTTGAACTACTTCTACATTTTCTCTTTCT
TTGGCTCTTGCCTGGTCTTTGCTGGACAACTTGAGCAAAATCGATACCACAGCATCTTTTGCTGTAAGAT
CCCTTCTGCAGAATACCTGGACCGCAAACCTGTGTGGTTCCAGACAGTAATGAGTGATGGGCACCAACAG
ACATCGCATCATGAGACAAACCCCTACCAGCACCATTTCATTCAGCACTTCCTTCGAGAACATTACAATG
AGTGGATTACCAATATCTATGTGAAGCCATTTGTGGTCATCCTGTATCTCATTTACGCCTCTTTCTCCTT
CATGGGGTGCTTGCAGATCAGTGATGGAGCCAGCATCATCAACCTACTAGCCAGTGATTCCCCAAGTGTT
TCCTACGCCATGGTTCAGCAAAAATATTTCAGCAACTATAGCCCTGTAATAGGATTCTACGTCTATGAAC
CCCTGGAGTACTGGAACAGCAGTGTCCAAGAGGATCTGCAGAGGCTCTGTAGTGGGTTCACTGCAGTGTC
CTGGGTAGAGCAGTATTACCAGTTTCTGAAAACGAGCAACATCAGTGCCAATAACAAGACTGACTTCATC
AGTGTCCTGCAAAGCTCGTTTTTAAAAAAGCCAGAATTCCAACACTTTCGGAATGATATCATTTTCTCCA
GAGCTGGTGATGAAAACAACATCATTGCTTCTCGCTTGTATCTGGTGGCCAGGACTAGCAGGGACAAGCA
GAAGGAAGTCATAGAAGTTCTGGACAAGTTGAGGCCCCTGTCTCTCTCAAAGAGTATCCGGTTCATCGTG
TTTAATCCTTCCTTTGTTTTCACAGACCATTACAGTTTGTCAGTCACTGTGCCTGTTCTGATCGCAGGCT
TTGGGGTTCTCCTGGTGTTAATCCTGACTTTCTTCCTAGTGATCCATCCTCTGGGAAACTTCTGGCTAAT
TCTTAGCGTCACCTCAATTGAGCTGGGCGTTCTGGGCTTAATGACGTTGTGGAATGTCGACATGGATTGC
ATTTCTATCTTGTGCCTTATCTACACTTTAAATTTTGCCATTGACCACTGTGCACCACTGCTTTATACAT
TTGTATTAGCAACTGAGCACACCAGAACACAGTGTATAAAAAGCTCCCTGCAAGAGCATGGGACAGCCAT
TTTGCAAAACATTACTTCTTTTCTTATTGGGTTGCTCCCCCTCCTCTTTGTGCCTTCAAACCTGACCTTC
ACACTGTTCAAATGCTTGCTGCTGACCGGGGGTTGCACGCTTCTGCACTGTTTTGTTATCTTACCTGTGT
TCCTAACCTTTTTTCCTCCTTCCAAAAAGCACCACAAGAAAAAGAAACGGGCCAAACGAAAGGAGAGAGA
GGAAATTGAATGCATAGAAATCCAAGAGAACCCTGATCACGTCACCACAGTCTGA

Translation (904 aa):
MCFLRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDL
ERLVAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSSPGDNILLQAEGILQTHRAVME
MKVNHKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDLRQAAVSNKTTARVQVRYPNTKLKDGRNSFIGHQ
LGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLMRKLQEEHQDLQLYSLASFSL
WRDFHKTSILTRSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISIATAAGIFFITDGKYNS
TLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIE
AVKIFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQ
TSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSV
SYAMVQQKYFSNYSPVIGFYVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKTSNISANNKTDFI
SVLQSSFLKKPEFQHFRNDIIFSRAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSLSKSIRFIV
FNPSFVFTDHYSLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNFWLILSVTSIELGVLGLMTLWNVDMDC
ISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNITSFLIGLLPLLFVPSNLTF
TLFKCLLLTGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPDHVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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