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Report for CCDS89145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89145.1 Public Mus musculus 17 Emilin2 23 108 98 CCDS HistoryNCBI Gene:246707Re-query CCDS DB by CCDS ID:89145.1Re-query CCDS DB by GeneID:246707See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024849.10 ENSMUSP00000024849.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024849.10Link to Ensembl Protein Viewer:ENSMUSP00000024849.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000024849Re-query CCDS DB by Protein ID:ENSMUSP00000024849
Original member NCBI NM_001357337.1 NP_001344266.1 Updated not alive Link to Nucleotide Sequence:NM_001357337.1Link to Protein Sequence:NP_001344266.1Re-query CCDS DB by Nucleotide ID:NM_001357337Re-query CCDS DB by Protein ID:NP_001344266
Current member NCBI NM_001357337.2 NP_001344266.1 Accepted alive Link to Nucleotide Sequence:NM_001357337.2Link to Protein Sequence:NP_001344266.1Re-query CCDS DB by Nucleotide ID:NM_001357337Re-query CCDS DB by Protein ID:NP_001344266Link to BLAST:NP_001344266.1

Chromosomal Locations for CCDS 89145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71252756 71253093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71255119 71255247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71255980 71256012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71256324 71256689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71273374 71275287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71280674 71280849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71310149 71310271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71310718 71310860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3222 nt):
ATGTGTCAGGAGACCCCGCCCCGACCCCGAGCACCCAGTCGCTGGACGCCGGCCCTGCTGGCCCTGCTGG
CCCTGGGCGGCGCGGGACTGTGCCACGCGAGCTCGCAGCCTGGGTACCACGCGAGGCCCAGTGCCAGGAA
CAAAAACTGGTGCGCCTACATCGTGAATAAGAACGTGAGCTGCACGGTACAGGAGGGAAGCGAGAGTTTT
ATTCAAGCTCAGTACAACTGTCCCTGGAACCAGATGCCCTGTCCATCCGCCCTGGTGTATCGGGTAAACT
TTAGACCCAGATTTGTCACTAGATACAAGATAGTGACACAGTTGGAATGGAGATGCTGTCCTGGCTTTAG
AGGACCAGACTGCCAAGAAGGTCCCAAAGACCACATGAAGACCCCCCGGCCCCCATCAGCTCGACCAAAA
AACAACCTGAAGAAAGCCACAGATACAGATCCAAGCCAAGTTTCTCAGCCTAAGAAAACGTTGTCCCCAA
CAAATGCAGTGGAACCAGGTCAGGTTGCAGATGCAAAGCAAGGCCCTCCGGAACTTCAGCAATCCAAAGT
CCAGGTGCTGGAGGAGAAGGTCGTCCGACTCACCAGGATGGTGCTGGATCTCCAGTCCACCGTGGTAGGC
CTGAAGGAGAACCTCAAACACACCATTCAAGATGATGGCAGAAAAGAGCCAGACTCCTGGCTCGGTCCCC
TGCACCCACAGCCAACGCCTGACAGCCCCCTTGCGGGGGACGCAGAGCCGAGCCAGCTTCCCGGAATCCC
CAGCAGCAAGGAATCTGGTATGAAGGACATCAAGTCTGAGTTGGCTGAGGTCAAAGACACACTGAAGACC
AAGAGTGACAAGCTAGAAGAGCTGGACGGGAAGGTGAAGGGCTATGAAGGACAGCTCAAGCAGCTGCAGG
AGGCGGCTCAGGGTCCCACGGTCACCATGACAACCAATGAGCTGTACCAAGCCTATGTGGATAGCAAGAT
CGATGCCCTGAGGGAGGAGCTCATGGAAGGCATGGACCGGAAGCTGGCTGACCTGAAGAATACGTGCGAG
TACAAGCTGGTGGGGCTCCAGCAGCAGTGTGATGACTACGGCAGCAGCTACCTCGGAGTGATAGAGCTGA
TCGGGGAGAAGGAGGCGAGCCTGAAAAAAGACATTGCTGACCTGCGAGCCCAGCTGCAGGATCCTGTAGC
CCAACCAAGCTGTTGCAATGGTCAAAAGAGCAGCGATTTCGGCCCACAGATCAAGGCGCTAGACCAGAAA
ATCGAGAGAGTTGCCGAGGCCACCAGGATGCTGAATGGACGGCTGGACAATGAGTTCGACCGCCTCTCCG
TTCCAGAGCCAGACGCAGACTTTGATGCGAGATGGACCGAGCTCGACGCAAGGATCAATGTGACGGAGAA
GAACGCAGAGGAGCATTGCTTTTACATTGAGGAGACCCTGCGGGGGACCATCAACGGCGAAGTGGATGAC
TTGAGGAAGCTTCTGAATGAGAAGATCCACTCCCTGGAAGACCGTCTGGGAATTGTTCTGCAAGCGGCTA
ACAGCTCAGACGTGGAGTTGACACCCATGGGCCCAGCCTTGCCAGAGCAGCCAGGGGCAGAGAATGAGCA
GGTCCTAATGGAGTTGAGCCGCCTGAAGGACAAAGTTCAAGTGGTTGAGGACTTCTGCCTGCAGAGCTTG
CCCCACGGGATAGATGGAGCTTTGCCTAGTGTAGAGGACCTCACGCATGTCAGCCTGAGCCTTTTAGAAT
CCCTCAATGATACGATGCACAGGCAGTTCCAAGAAACGAGTCACAGCATCCAGAAACTCCAAGAGGACGT
CAATGCCCTCCATTCTCAACTGAATCACTCCGAATGTACGGGGACTTACTTGCAGAACGGAGTGAGCGAC
AGCCGAACAGGTGACAGCATGGAAGCAAGTGGGTTTACTAAGACAGGGGAGCAAGAGAGGACAGTGGGGA
CTGTCCCGTCTCCTGGGACCCCCGCGGCTCCATGCTGTGGTCAGCTGGAGGAGCGCTGGCAGAAGCTGCA
GAACCAAATGTTGGCTGAGCTAGACACGTGTAAGGAGAGTGCTCACGGGGTTCAGAGTGGGGTGTCTGCG
ATCGAGGGCAGGGTGTTCCAGCTGGAGCAGACATGCAGAAGGCTGGATACCATCTCAGGGAGTCTGCAGA
GGATCAAGGAGGGGCTCGGTAAGCATGTGGGCAGCTTGTGGAACTGCATCCGGCAGATGAACGGGACGCT
CAAATCGCACTCCAGAGACATCTCTGGCCTCAAGAATTCTGTGCAGCAATTCTATAGCCATGTTTTCCAG
ATTTCTACCGACTTGCAAGATCTGGTCAAGTTTCAGCCATCAGCAAAGGAACCCTCAGAAGCAACCGAGG
GACCGTCTGGGAAGACTCCCCTAGAATCCACCAGACCTTCAGAGGAGGCCCCCACTGAACCACCCCGGCT
GACCCCACTGCCAGAAGACCCTGCAGGACCACCACAGACAGGCCAGCAGCCAGTATTGCCCCAGAGGCCC
CTGCAGCCACCACCTTTGCCTGCCTGGCCTGGTCGCACGGGGTTGCCCTTCTTGCCTGGCTCTAGTGGCG
TCATCATGGAGACTGGAGAGGCGGGGCCTCCAGGCAGGATGGGCGTGTCCGGAAGGGGCCTGCCTCGGGG
AGTGGATGGCCAGATGGGGCAGGGGCCCATTCATAGCTCGGAAGGCTATGCAGGGGCACCAGGCTACCCC
AAGTCACCTCCTGTAACCACCCCAGGGGTGCCGCTGCCCACTCTGGTGTCCTTTTCAGCCGGTCTTACCC
AGAAGCCTTTTCCCAGCGATGGAGGCGTTGTTCTCTTCAATAAGGTGCTGGTGAACGATGGGGATGTATA
CAACCCCAACACTGGGATCTTCACCGCACCATACGACGGGCGCTACTTGATCACAGCCACCCTCACCCCT
GAGAGAGACACCTATGTGGAAGCCGTCCTGTCTGTCTCCAACGCCAGTGTTGCCCAGCTGCACACGGCTG
GGTACAGGAGAGAGTTCCTGGAATACCATCGTCCCCCTGGGGCTGTGCATACCTGTGGGGGCCCGGGGGC
CTTCCACCTCATTGTGCACTTGAAGGCAGGAGATGGAGTCAATGTTGTGGTGACTGGGGGCAGACTGGCT
CACACAGACTTTGATGAAATGTACTCCACCTTCAGTGGTGTTTTCTTGTACCCTTTCCTTTCTCACCTCT
AG

Translation (1073 aa):
MCQETPPRPRAPSRWTPALLALLALGGAGLCHASSQPGYHARPSARNKNWCAYIVNKNVSCTVQEGSESF
IQAQYNCPWNQMPCPSALVYRVNFRPRFVTRYKIVTQLEWRCCPGFRGPDCQEGPKDHMKTPRPPSARPK
NNLKKATDTDPSQVSQPKKTLSPTNAVEPGQVADAKQGPPELQQSKVQVLEEKVVRLTRMVLDLQSTVVG
LKENLKHTIQDDGRKEPDSWLGPLHPQPTPDSPLAGDAEPSQLPGIPSSKESGMKDIKSELAEVKDTLKT
KSDKLEELDGKVKGYEGQLKQLQEAAQGPTVTMTTNELYQAYVDSKIDALREELMEGMDRKLADLKNTCE
YKLVGLQQQCDDYGSSYLGVIELIGEKEASLKKDIADLRAQLQDPVAQPSCCNGQKSSDFGPQIKALDQK
IERVAEATRMLNGRLDNEFDRLSVPEPDADFDARWTELDARINVTEKNAEEHCFYIEETLRGTINGEVDD
LRKLLNEKIHSLEDRLGIVLQAANSSDVELTPMGPALPEQPGAENEQVLMELSRLKDKVQVVEDFCLQSL
PHGIDGALPSVEDLTHVSLSLLESLNDTMHRQFQETSHSIQKLQEDVNALHSQLNHSECTGTYLQNGVSD
SRTGDSMEASGFTKTGEQERTVGTVPSPGTPAAPCCGQLEERWQKLQNQMLAELDTCKESAHGVQSGVSA
IEGRVFQLEQTCRRLDTISGSLQRIKEGLGKHVGSLWNCIRQMNGTLKSHSRDISGLKNSVQQFYSHVFQ
ISTDLQDLVKFQPSAKEPSEATEGPSGKTPLESTRPSEEAPTEPPRLTPLPEDPAGPPQTGQQPVLPQRP
LQPPPLPAWPGRTGLPFLPGSSGVIMETGEAGPPGRMGVSGRGLPRGVDGQMGQGPIHSSEGYAGAPGYP
KSPPVTTPGVPLPTLVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYNPNTGIFTAPYDGRYLITATLTP
ERDTYVEAVLSVSNASVAQLHTAGYRREFLEYHRPPGAVHTCGGPGAFHLIVHLKAGDGVNVVVTGGRLA
HTDFDEMYSTFSGVFLYPFLSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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