NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89230.1 Public Mus musculus 18 Tcerg1 23 108 98 CCDS HistoryNCBI Gene:56070Re-query CCDS DB by CCDS ID:89230.1Re-query CCDS DB by GeneID:56070See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025375.14 ENSMUSP00000025375.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025375.14Link to Ensembl Protein Viewer:ENSMUSP00000025375.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025375Re-query CCDS DB by Protein ID:ENSMUSP00000025375
Original member Current member NCBI NM_001360881.1 NP_001347810.1 Accepted alive Link to Nucleotide Sequence:NM_001360881.1Link to Protein Sequence:NP_001347810.1Re-query CCDS DB by Nucleotide ID:NM_001360881Re-query CCDS DB by Protein ID:NP_001347810Link to BLAST:NP_001347810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347810.1 1079 Q8CGF7-2 1079 100% 0 0

Chromosomal Locations for CCDS 89230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 42511527 42511585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42519368 42519593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42522914 42523066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42523893 42524352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42530648 42530890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42536178 42536378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42536862 42536974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42537968 42538056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42548397 42548557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42549838 42549894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42550042 42550108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42552492 42552627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42553408 42553497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42560934 42561052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42564083 42564233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42567871 42568035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42568428 42568610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42571015 42571194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42571824 42571907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42573260 42573360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42574518 42574719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3240 nt):
ATGGCGGAGCGTGGCGGGGACGGAGGGGAAGGCGAGCGGTTCAACCCGGGGGAGCTGAGGATGGCTCAAC
AGCAGGCCTTGAGGTTCCGAGGCCCAGCTCCCCCACCAAATGCCGTGATGCGAGGCCCGCCACCTCTCAT
GAGACCACCTCCTCCTTTCGGCATGATGAGAGGCCCTCCTCCACCACCCAGGCCCCCCTTTGGACGGCCT
CCTTTTGATCCTAATATGCCACCAATGCCTCCTCCAGGAGGAATACCTCCACCTATGGGCCCACCTCACC
TACAGAGACCACCTTTCATGCCTCCACCCATGGGAGCTATGCCTCCTCCTCCGGGTATGATGTTCCCACC
AGGAATGCCTCCGGGGACTGCTCCTGGTGCTCCAGCACTGCCTCCCACTGAGGAGATATGGGTAGAAAAT
AAAACTCCAGATGGGAAGGTTTATTACTACAATGCTCGGACTCGTGAATCTGCATGGACCAAGCCAGATG
GAGTTAAGGTTATTCAGCAATCAGAACTGACGCCCATGCTTGCAGCCCAAGCACAGGTTCAGGCCCAGGC
CCAGGCCCAGGCCCAAGCACAGGCTCAGGCCCAGGCCCAGGCACAAGCCCAGGCTCAGGCCCAGGCCCAG
GCCCAGGCTCAGGCACAAGCCCAGGCTCAGGCCCAGGCCCAGGCCCAGGCTCAGGCTCAAGCCCAAGCCC
AAGCGCAAGCACAAGCCCAGGCCCAAGCCCAGGCCCAGGCTCAGGCCCAGGCACAAGTCCAAGCACAAGC
AGTAGGCGCTCCCACCCCTACCACCAGTAGCCCAGCACCTGCAGTGTCCACGTCAACTCCGACATCTACC
CCATCCTCCACCACAGCTACCACGACAACTGCTACTTCAGTTGCACAGACAGTATCAACACCCACAACAC
AAGACCAGACCCCAAGTTCTGCTGTTTCAGTTGCCACACCTACAGTTAGTGTTTCAGCTCCTGCTCCTAC
AGCCACACCTGTGCAAACCGTACCCCAGCCGCACCCACAGACGTTACCTCCTGCTGTTCCTCACTCGGTA
CCTCAGCCGGCAGCAGCAATACCTGCTTTCCCACCAGTAATGGTGCCTCCGTTCCGTGTGCCCCTGCCTG
GCATGCCAATCCCACTTCCAGGTGTACTACCAGGAATGGCCCCTCCTATAGTACCCATGATCCATCCCCA
GGTTGCTATTGCAGCTTCACCTGCTACCCTAGCTGGGGCAACAGCAGTTTCTGAGTGGACTGAATATAAA
ACAGCAGATGGGAAGACGTACTATTATAATAATAGAACACTAGAATCCACGTGGGAGAAGCCCCAAGAAC
TGAAGGAGAAAGAAAAATTAGATGAGAAGATTAAAGAACCAATTAAGGAGGCCTCTGAAGAGCCATTGCC
AATGGAGACTGAGGAGGAAGATCCTAAGGAAGAGCCTGTGAAGGAGATAAAGGAGGAGCCCAAAGAAGAA
GAGATGACTGAAGAAGAAAAGGCTGCCCAGAAGGCAAAGCCAGTAGCTACTACTCCTATTCCTGGTACTC
CATGGTGTGTTGTTTGGACTGGTGATGAGAGGGTCTTCTTTTACAATCCCACCACCCGCCTTTCTATGTG
GGACCGGCCTGATGATTTGATTGGAAGGGCGGATGTTGACAAAATTATTCAAGAGCCCCCTCATAAGAAA
GGATTGGAAGACATGAAGAAGCTAAGGCACCCGGCTCCGACAATGCTGTCCATCCAAAAGTGGCAGTTCT
CAATGAGCGCAATTAAAGAAGAACAAGAGTTAATGGAAGAAATGAATGAAGATGAGCCTATTAAAGCAAA
AAAGCGGAAGAGAGATGATAATAAAGACATTGATTCAGAGAAAGAAGCTGCCATGGAAGCTGAAATTAAA
GCTGCCCGAGAAAGGGCCATTGTCCCTCTGGAGGCTCGAATGAAGCAGTTCAAGGACATGCTGCTAGAGA
GAGGGGTGTCTGCTTTTTCAACATGGGAGAAAGAGTTGCACAAGATAGTATTTGACCCTCGGTACTTGCT
TCTCAATCCTAAAGAAAGAAAACAGGTGTTTGATCAGTATGTCAAGACCAGAGCAGAGGAAGAACGCAGG
GAAAAGAAAAACAAAATAATGCAAGCCAAGGAAGATTTCAAAAAAATGATGGAAGAAGCAAAGTTTAATC
CAAGAGCTACTTTTAGTGAATTTGCTGCCAAACATGCTAAAGATTCAAGATTCAAAGCAATTGAAAAGAT
GAAAGATAGAGAAGCATTGTTTAATGAGTTTGTGGCAGCTGCAAGGAAGAAAGAAAAAGAAGATTCGAAG
ACGAGAGGGGAGAAGATTAAATCAGATTTCTTTGAACTGTTATCTAATCATCACTTGGATAGTCAATCTC
GATGGAGCAAAGTAAAAGACAAAGTAGAAAGTGACCCCCGATATAAAGCGGTGGATAGTTCATCAATGAG
AGAAGACCTTTTCAAACAGTACATCGAGAAAATAGCCAAGAATTTAGACTCAGAAAAAGAAAAAGAGCTG
GAGAGGCAAGCCCGCATTGAGGCAAGCCTTCGAGAACGGGAAAGAGAAGTTCAGAAGGCGCGCTCTGAGC
AGACGAAAGAGATCGATCGGGAGAGAGAGCAGCACAAACGGGAGGAGGCTATCCAGAACTTCAAGGCTCT
TCTGTCTGACATGGTACGTTCTTCAGATGTGTCCTGGTCTGATACTAGGAGGACCCTCCGGAAAGACCAC
CGCTGGGAATCTGGGTCCTTATTGGAAAGAGAGGAGAAAGAGAAACTTTTTAATGAACATATTGAAGCGC
TTACCAAAAAGAAAAGGGAGCACTTTAGGCAGCTTCTGGACGAAACCTCTGCGATTACCTTAACATCCAC
GTGGAAAGAAGTGAAAAAAATAATTAAGGAAGATCCTCGGTGCATTAAGTTCTCCTCCAGTGACAGGAAA
AAACAAAGGGAGTTTGAAGAATACATCAGAGACAAATACATCACTGCCAAAGCTGACTTCAGGACACTTT
TGAAAGAGACCAAATTCATTACATACAGATCCAAAAAGTTAATCCAAGAATCTGATCAGCACCTGAAAGA
TGTAGAAAAGATTTTGCAGAATGACAAACGGTATCTAGTACTGGACTGTGTCCCCGAGGAGAGGAGGAAA
CTAATTGTGGCCTATGTTGATGACCTGGATCGCCGAGGTCCACCCCCACCTCCCACAGCATCAGAGCCCA
CTAGACGATCAACAAAATAA

Translation (1079 aa):
MAERGGDGGEGERFNPGELRMAQQQALRFRGPAPPPNAVMRGPPPLMRPPPPFGMMRGPPPPPRPPFGRP
PFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMPPGTAPGAPALPPTEEIWVEN
KTPDGKVYYYNARTRESAWTKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQ
AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQAVGAPTPTTSSPAPAVSTSTPTST
PSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPVQTVPQPHPQTLPPAVPHSV
PQPAAAIPAFPPVMVPPFRVPLPGMPIPLPGVLPGMAPPIVPMIHPQVAIAASPATLAGATAVSEWTEYK
TADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPIKEASEEPLPMETEEEDPKEEPVKEIKEEPKEE
EMTEEEKAAQKAKPVATTPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHKK
GLEDMKKLRHPAPTMLSIQKWQFSMSAIKEEQELMEEMNEDEPIKAKKRKRDDNKDIDSEKEAAMEAEIK
AARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERR
EKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSK
TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKEL
ERQARIEASLREREREVQKARSEQTKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDH
RWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRK
KQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRK
LIVAYVDDLDRRGPPPPPTASEPTRRSTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH