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Report for CCDS89475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89475.1 Public Mus musculus 2 Slc2a8 23 108 98 CCDS HistoryNCBI Gene:56017Re-query CCDS DB by CCDS ID:89475.1Re-query CCDS DB by GeneID:56017See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153484.6 ENSMUSP00000141959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153484.6Link to Ensembl Protein Viewer:ENSMUSP00000141959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153484Re-query CCDS DB by Protein ID:ENSMUSP00000141959
Original member NCBI NM_001356409.1 NP_001343338.1 Updated not alive Link to Nucleotide Sequence:NM_001356409.1Link to Protein Sequence:NP_001343338.1Re-query CCDS DB by Nucleotide ID:NM_001356409Re-query CCDS DB by Protein ID:NP_001343338
Current member NCBI NM_001356409.2 NP_001343338.1 Accepted alive Link to Nucleotide Sequence:NM_001356409.2Link to Protein Sequence:NP_001343338.1Re-query CCDS DB by Nucleotide ID:NM_001356409Re-query CCDS DB by Protein ID:NP_001343338Link to BLAST:NP_001343338.1

Chromosomal Locations for CCDS 89475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32974864 32974983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32976137 32976280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32976861 32977060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32980002 32980101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32981361 32981567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32981721 32981883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32981958 32982013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGTCTCCCGAGGACCCCCAGGAGACGCAGCCGCTATTGCGGCCACCGGAAGCCAGGACTCCCCGCGGCC
GCCGGGTCTTCCTCGCTTCCTTCGCCGCCGCTCTGGGACCCCTCAGCTTCGGCTTCGCGCTCGGCTACAG
CTCCCCCGCCATCCCCAGCCTGCGGCGCACCGCACCCCCGGCCCTGCGCCTCGGAGACAATGCGGCCTCC
TGGTTCGGGGCCGTCGTGACCCTGGGCGCTGCTGCAGGGGGCATACTGGGCGGCTGGCTCCTGGACCGTG
CAGGGCGCAAGCTGAGCCTCTTGCTCTGCACCGTGCCCTTCGTGACTGGCTTTGCTGTCATCACCGCGGC
CCGGGATGTGTGGATGCTGCTCGGAGGCCGCCTCCTCACCGGCCTTGCCTGCGGAGTCGCCTCACTAGTG
GCACCGGTTTACATCTCGGAAATCGCCTACCCAGCTGTCCGAGGACTGCTCGGCTCCTGTGTGCAGCTGA
TGGTTGTCACTGGCATCCTCCTGGCCTATGTGGCAGGCTGGGTCCTAGAGTGGCGCTGGCTGGCCGTGCT
GGGCTGTGTGCCCCCCACCCTCATGCTGCTGCTCATGTGCTACATGCCCGAGACCCCACGTTTTCTCCTC
ACTCAACACCAGTACCAGGAGGCCATGGCTGCCTTGCGCTTCCTGTGGGGCTCTGAGGAGGGCTGGGAAG
AGCCCCCTGTTGGGGCTGAGCACCAGGGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCC
CCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCC
AACAGCATCTTCGAGGAGGCCAAGTTCAAGGCTTTGCGGTGGGCTGGGGACCCATCCCCTGGCTCCTCAT
GTCAGAGATCTTCCCTCTGCATGTCAAGGGTGTGGCTACCGGCATCTGTGTCCTCACCAACTGGTTCATG
GCCTTTCTAG

Translation (329 aa):
MSPEDPQETQPLLRPPEARTPRGRRVFLASFAAALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDNAAS
WFGAVVTLGAAAGGILGGWLLDRAGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLV
APVYISEIAYPAVRGLLGSCVQLMVVTGILLAYVAGWVLEWRWLAVLGCVPPTLMLLLMCYMPETPRFLL
TQHQYQEAMAALRFLWGSEEGWEEPPVGAEHQGFQLALLRRPGIYKPLIIGISLMVFQQLSGVNAIMFYA
NSIFEEAKFKALRWAGDPSPGSSCQRSSLCMSRVWLPASVSSPTGSWPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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