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Report for CCDS89479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89479.1 Public Mus musculus 2 Rabepk 23 108 98 CCDS HistoryNCBI Gene:227746Re-query CCDS DB by CCDS ID:89479.1Re-query CCDS DB by GeneID:227746See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118108.1 ENSMUSP00000113099.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118108.1Link to Ensembl Protein Viewer:ENSMUSP00000113099.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118108Re-query CCDS DB by Protein ID:ENSMUSP00000113099
Current member NCBI NM_001374669.1 NP_001361598.1 Accepted alive Link to Nucleotide Sequence:NM_001374669.1Link to Protein Sequence:NP_001361598.1Re-query CCDS DB by Nucleotide ID:NM_001374669Re-query CCDS DB by Protein ID:NP_001361598Link to BLAST:NP_001361598.1

Chromosomal Locations for CCDS 89479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34779237 34779529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34780597 34780746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34784546 34784695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34785567 34785728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34790503 34790655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34795172 34795329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34797375 34797427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAAGCAGCTGCCCATCTTGGAGCCTGGAGACAAGCCCAGGAAAGCCACATGGTACACTTTGACTTGCC
CTGGAGACAGGCCCTGCCCTCGAGTTGGCCACAGCTGCTCATATTTCCCCCCAGTTGGTGATGCCGAGAG
CGGGAAGATCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGTTTCTCAGATGTACACACCATGGACTTG
GGAACACACCAGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTACGAGCATGCCAGCTTCCTTC
CCTCCTGCTCTCCTCACAGCATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTGCA
AGTCATGAGTCCTGAAGACAGGACGTGGAGCACACCAGAAGTGACTGGCTCCCCTCCATCCCCAAGAACA
TTCCACACATCGTCCGCAGCTATCGGAAACCAACTATACGTCTTTGGGGGAGGAGAGAGAGGTGCCCAGC
CTGTGGAGGACGTGAAGTTGCATGTATTTGACGCAAACACTCTGACATGGTCTCAACCGGAGACACATGG
AAGTCCTCCGTCTCCTCGGCATGGCCATGTGATGGTGGCAGCGGGCACAAAACTCTTCATCCACGGAGGA
TTGGCAGGGGACAAGTTCTTTGATGATCTCCATTGCATTGATATAGGTGACATGAGCTGGCAGAAGCTTG
GTCCCACCGGGGCTGTTCCAGTCGGCTGTGCTGCCCATGCCGCCGTTGCTGTGGGACACCATGTATATAT
GTTTGGAGGTATGACAGCCACTGGAGCACTGAACATGATGTACAAGTATCACACAGAAAAGCAGCACTGG
ACTGTACTTCAGTTTGACACTTCCCTACCCGCTGGACGACTGGACCACTCCATGTGTGTCATCCCATGGC
CAGTGATGTCTACCTCTGAGAATAAAGACTCAGATTCTGTCATTCTAACCCTCCAAGATGAGAAAGGGGA
CGCTGCTGAGAAAGCAGAGACCCAGAGTGGAGGACCACACGAGGAGAGTCCAACTACTGTGTTGCTCTGC
TTTGTGTTCGGTGGGATGAACACAGAAGGGGAGGTTTATGACGACTGTCTCGTAACTGTAGTGGACTAA

Translation (372 aa):
MKQLPILEPGDKPRKATWYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDL
GTHQWDTATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMSPEDRTWSTPEVTGSPPSPRT
FHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGG
LAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHW
TVLQFDTSLPAGRLDHSMCVIPWPVMSTSENKDSDSVILTLQDEKGDAAEKAETQSGGPHEESPTTVLLC
FVFGGMNTEGEVYDDCLVTVVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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