NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89500.1 Public Mus musculus 2 Cwc22 23 108 98 CCDS HistoryNCBI Gene:80744Re-query CCDS DB by CCDS ID:89500.1Re-query CCDS DB by GeneID:80744See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111824.7 ENSMUSP00000107455.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111824.7Link to Ensembl Protein Viewer:ENSMUSP00000107455.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111824Re-query CCDS DB by Protein ID:ENSMUSP00000107455
Original member NCBI NM_001362664.1 NP_001349593.1 Updated not alive Link to Nucleotide Sequence:NM_001362664.1Link to Protein Sequence:NP_001349593.1Re-query CCDS DB by Nucleotide ID:NM_001362664Re-query CCDS DB by Protein ID:NP_001349593
NCBI NM_001362664.2 NP_001349593.1 Updated not alive Link to Nucleotide Sequence:NM_001362664.2Link to Protein Sequence:NP_001349593.1Re-query CCDS DB by Nucleotide ID:NM_001362664Re-query CCDS DB by Protein ID:NP_001349593
Current member NCBI NM_001362664.3 NP_001349593.1 Accepted alive Link to Nucleotide Sequence:NM_001362664.3Link to Protein Sequence:NP_001349593.1Re-query CCDS DB by Nucleotide ID:NM_001362664Re-query CCDS DB by Protein ID:NP_001349593Link to BLAST:NP_001349593.1

Chromosomal Locations for CCDS 89500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77881456 77881490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77903814 77904034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77904124 77904225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77905357 77905484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77907082 77907234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77908068 77908145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77911510 77911570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77915497 77915578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77917056 77917163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77920818 77920880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77920967 77921173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77921410 77921545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77924140 77924193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77924487 77924655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77927208 77927336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77929256 77929498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77931435 77931545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77932699 77932763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77936593 77936619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGAAAAGTAGTGTGGCACACATGAAGTCCTCTGGTCACAACAGAAGGGAGACCCACAGTTCATACCGCC
GGAGCTCCTCCCCAGAAGACAGATACACAGAGCAAGAGCGGTCCCCCCGGGATAGAGGTTACTCTGATTA
CAGCCGGTCAGACTATGAGCGATCTAGAAGAGGATACTCTTACGATGACAGCATGGAATCACGAAGTAGG
GACCGAGAAAAACGCAGAGAGAGAGAGAGAGATGCAGATCATCGGAAACGGTCCCGGAAATCGCCATCCC
CTGACAGGAGTCCAGCCCGAGGCGGAGGGCAGAGTTCTCCTCAGGAGGAACCGACATGGAAGAAGAAGAA
GGATGAGCTGGACCCGCTGCTCACCCGCACTGGGGGAGCGTATATCCCTCCTGCGAAGCTCAGGATGATG
CAGGAGCAGATCACAGATAAAAGCAGCTTAGCATATCAGAGGATGAGCTGGGAGGCTCTGAAGAAATCCA
TCAATGGTCTCATCAACAAGGTCAACATCTCTAATATAAGCATTATTATCCAAGAGCTCCTTCAAGAGAA
CATTGTCAGAGGGAGAGGATTGCTGTCCAGATCTGTTCTGCAAGCCCAGAGTGCGTCTCCAATCTTCACT
CACGTTTATGCAGCTTTGGTGGCAATAATCAACTCAAAATTCCCACAGATTGGAGAATTGATCCTCAAGA
GACTAATTCTTAATTTTCGGAAAGGCTATCGAAGGAACGATAAGCAACTTTGCCTGACTGCTTCAAAATT
TGTGGCACATCTTATTAACCAAAATGTGGCACATGAGGTTCTGTGCCTGGAGATGCTCACTTTGCTACTA
GAGAGACCAACAGATGACAGTGTTGAAGTAGCTATCGGCTTCCTCAAAGAGTGTGGTCTCAAATTAACCC
AGGTGTCACCAAGGGGAATTAATGCAATCTTTGAACGCCTTCGAAACATTCTACACGAGTCTGAGATCGA
CAAAAGAGTTCAGTACATGATTGAAGTGATGTTTGCTGTACGGAAGGATGGATTCAAGGACCACCCTGTT
ATTCTGGAAGGACTTGATTTAGTGGAAGAGGACGATCAGTTTACACATATGCTCCCCTTAGAGGATGACT
ACAATCCAGAAGATGTTCTTAATGTTTTCAAGATGGATCCTAATTTTATGGAGAATGAAGAGAAGTACAA
GGCTATTAAAAAAGAAATCCTTGACGAAGGAGACAGTGATTCAAACACAGACCAAGGAGCTGGAAGTAGT
GAAGATGAGGAGGAGGAAGACGAGGAGGAGGAAGGAGAAGACGAGGAAGGAGGGCAAAAAGTAACTATTC
ATGACAAAACAGAAATCAACCTAGTCTCGTTTCGCCGTACAATCTATCTTGCCATTCAGTCAAGTTTAGA
TTTTGAAGAATGTGCACACAAGTTGCTGAAAATGGAGTTTGCAGAGAGCCAAACAAAAGAACTCTGCAAC
ATGATACTTGATTGCTGTGCCCAACAAAGGACCTATGAAAAATTTTTTGGCTTGTTAGCTGGGCGGTTTT
GTATGCTGAAAAAGGAATACATGGAATCATTTGAAAGTATATTCAAGGAACAGTACGACACCATCCATCG
CTTAGAGACAAACAAATTGAGAAATGTTGCTAAAATGTTTGCTCACCTTTTATACACAGATTCACTTCCG
TGGAGTGTTCTCGAATGTATAAAACTGAGTGAAGAGACCACGACATCGTCTAGTCGAATTTTTGTCAAGA
TCTTCTTCCAGGAACTGTGTGAATACATGGGTCTTCCTAAACTGAATGCGAGGTTGAAGGATGAAACTCT
CCAGCCATTCTTTGAAGGTCTGTTACCCAGAGACAACCCACGCAATACCCGGTTTGCCATCAACTTCTTC
ACTTCCATAGGTCTCGGAGGATTGACGGATGAACTGCGAGAACATCTGAAAAATACGCCCAAGGTCATCG
TAGCCCAGAAACCAGAAGCTGAACAAAAGAAACCAGCCCTGACATCTTCATCTTCAGAGTCTTCCTCGGC
GTCTGATTCCTCTGACTCAGAATCTGACAGCAGCGAGAGCAGCTCAGAGTCCTCTAGTGATGCGAGCGAC
TCCTCCTCCTCCTCCAGCACTCAGAGCTCTACCTCAGTTTCAGAAAATACAAGAAGACTAAGAGCTTGCT
AA

Translation (723 aa):
MKSSVAHMKSSGHNRRETHSSYRRSSSPEDRYTEQERSPRDRGYSDYSRSDYERSRRGYSYDDSMESRSR
DREKRRERERDADHRKRSRKSPSPDRSPARGGGQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMM
QEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFT
HVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLL
ERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPV
ILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSS
EDEEEEDEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCN
MILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP
WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF
TSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKPALTSSSSESSSASDSSDSESDSSESSSESSSDASD
SSSSSSTQSSTSVSENTRRLRAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH