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Report for CCDS89811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89811.1 Public Mus musculus 4 Atpaf1 23 108 98 CCDS HistoryNCBI Gene:230649Re-query CCDS DB by CCDS ID:89811.1Re-query CCDS DB by GeneID:230649See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000239030.1 ENSMUSP00000158943.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000239030.1Link to Ensembl Protein Viewer:ENSMUSP00000158943.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000239030Re-query CCDS DB by Protein ID:ENSMUSP00000158943
Original member Current member NCBI NM_001369233.1 NP_001356162.1 Accepted alive Link to Nucleotide Sequence:NM_001369233.1Link to Protein Sequence:NP_001356162.1Re-query CCDS DB by Nucleotide ID:NM_001369233Re-query CCDS DB by Protein ID:NP_001356162Link to BLAST:NP_001356162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356162.1 324 Q811I0 324 100% 0 0

Chromosomal Locations for CCDS 89811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115785051 115785304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115788262 115788370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115790581 115790631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115791223 115791285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115795404 115795454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115796755 115796802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115797966 115798061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115800318 115800425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115811002 115811196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCGGCGGTAGTGTCCGCTGCGGGTGGAGCGTGCCCCGCAGTCCTGCAGGTGGCGGGTCTCTACCGAG
GCCTGTGTGCAGTGCGCAGCCGCGCCCTGGGGCTGGGGTTCGTGTCACCGGCACAGTTGCGCGTGTTCCC
GGTGCGCCGGGGCTCGGGCCTGCCCCCCGAGGGAGCAGACGGCAGTGGGGTCAGCGAGCTGGAAGCGAAC
CCCTTCTACGACCGCTACCGGGACAAGATCCAGCAGCTGCGCAGGTCTGACCCAGCGGCCTTTGAGTCCC
GCCTGGAGAAGCGCAGTGAGTTCCGAAAGCAGCCAGTGGGGCACTCCAAACAAAGTGATTTTATCAAGTG
TATGGAGCAGAAGACAGATGCCTTGGGGAAACAGCCTGTGAGCAAAGGATTCACTAAGGACAAGACTCTC
AGTTCAGTCTTCAACGTTGAGATGGTGAAAGACAAAACTGCGGAGGAAATAAAACAGATTTGGCAGCAGT
ATTTTTCAGCAAAAGACACAGTCTACGCAGTTATTCCTAAAGAGAAGTTTGATTTGATCTGGAACAGGGC
TCAGTCCTGCCCAACATTTCTTTGTGCACTACCAAGAAGGGATGGTTATGAGTTCTTTGTAGGACAATGG
ACAGGTACAGAGCTCCACTTCACTGCACTTATAAATATTCAGACCCGAGGGGATGCAGCAGCCAGCCAGC
TGATTTTATATCACTATCCTGAACTTAAGGAAGAAAAGGGCATAGTGCTGATGACAGCAGAAATGGACTC
CACATTTCTGAATGTTGTGGAGGCACAGTGCATCGCCAATCAGGTTCAGCTCTTCTACGCCACCGATCGG
AAGGAGATCTATGGGCTAGTAGAGACCTTTAACTTCAGACCAAATGAGTTCAAATATATGTCTGTCATCG
CTGAGTTGGAGCAAAGTGGACTTGGAGCCGAACTGAAACGTGCCCAGAACCAAGATAAGACTTAG

Translation (324 aa):
MAAVVSAAGGACPAVLQVAGLYRGLCAVRSRALGLGFVSPAQLRVFPVRRGSGLPPEGADGSGVSELEAN
PFYDRYRDKIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIKCMEQKTDALGKQPVSKGFTKDKTL
SSVFNVEMVKDKTAEEIKQIWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQW
TGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVVEAQCIANQVQLFYATDR
KEIYGLVETFNFRPNEFKYMSVIAELEQSGLGAELKRAQNQDKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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