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Report for CCDS89842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89842.1 Public Mus musculus 4 Slc30a2 23 108 98 CCDS HistoryNCBI Gene:230810Re-query CCDS DB by CCDS ID:89842.1Re-query CCDS DB by GeneID:230810See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081094.5 ENSMUSP00000079875.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081094.5Link to Ensembl Protein Viewer:ENSMUSP00000079875.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081094Re-query CCDS DB by Protein ID:ENSMUSP00000079875
Original member Current member EBI ENSMUST00000105872.7 ENSMUSP00000101498.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105872.7Link to Ensembl Protein Viewer:ENSMUSP00000101498.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105872Re-query CCDS DB by Protein ID:ENSMUSP00000101498
Original member Current member NCBI NM_001346578.1 NP_001333507.1 Accepted alive Link to Nucleotide Sequence:NM_001346578.1Link to Protein Sequence:NP_001333507.1Re-query CCDS DB by Nucleotide ID:NM_001346578Re-query CCDS DB by Protein ID:NP_001333507Link to BLAST:NP_001333507.1

Chromosomal Locations for CCDS 89842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134344198 134344216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134345903 134346049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134347340 134347493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134348477 134348645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134349285 134349390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134351951 134352085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134352383 134352528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGATTGGCGAAATCATTGGTGGGTACCTGGCACAGAGCCTGGCCATCATGACCGACGCTGCGCACCTGC
TCACGGATTTTGCCAGCATGCTCATTAGCCTCTTCGCCCTCTGGGTGTCTTCCCGACCAGCCACCAAGAC
CATGAACTTCGGCTGGCATCGAGCCGAGATCCTTGGAGCCTTGTTGTCCGTGCTTTCCATCTGGGTGGTG
ACTGGGGTGCTCGTGTACCTGGCCGTGCAGCGGTTGATTTCTGGAGATTATGAGATCAAAGGGGACACCA
TGTTGATCACTTCGGGCTGCGCTGTGGCTGTGAACCTCATAATGGGGTTGGCCCTCCATCAGTCTGGACA
CGGGCACAGCCATGGGAACAGCCGTGACGACAGCAGCCAGCAGCAGAACCCCAGCGTCCGAGCTGCCTTC
ATTCATGTGATTGGGGACCTTCTGCAGAGTGTGGGGGTACTGGTGGCAGCCTATATCATATACTTCAAGC
CTGAGTACAAGTACGTGGACCCCATCTGCACCTTCCTCTTCTCCATCCTGGTCTTGGGGACAACGTTGAC
CATCCTAAGAGACGTGATCTTGGTCCTGATGGAAGGGACTCCCAAAGGCGTGGACTTCACAACCGTGAAA
AATCTCCTGCTGTCCGTGGATGGGGTGGAAGCCCTGCATAGCCTGCATATCTGGGCGCTGACAGTGGCCC
AGCCGGTGCTGTCTGTCCACATAGCCATTGCCCAGAATGCTGATGCCCAGGCTGTGCTGAAGGTGGCTAG
GGACCGCCTCCAGGGGAAGTTCAATTTCCACACCATGACCATCCAGATTGAGAAGTACTCTGAGGACATG
AAGAACTGCCAGGCGTGCCAGGGCCCCTTGGAATGA

Translation (291 aa):
MIGEIIGGYLAQSLAIMTDAAHLLTDFASMLISLFALWVSSRPATKTMNFGWHRAEILGALLSVLSIWVV
TGVLVYLAVQRLISGDYEIKGDTMLITSGCAVAVNLIMGLALHQSGHGHSHGNSRDDSSQQQNPSVRAAF
IHVIGDLLQSVGVLVAAYIIYFKPEYKYVDPICTFLFSILVLGTTLTILRDVILVLMEGTPKGVDFTTVK
NLLLSVDGVEALHSLHIWALTVAQPVLSVHIAIAQNADAQAVLKVARDRLQGKFNFHTMTIQIEKYSEDM
KNCQACQGPLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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