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Report for CCDS89855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89855.1 Public Mus musculus 4 Miip 23 108 98 CCDS HistoryNCBI Gene:28010Re-query CCDS DB by CCDS ID:89855.1Re-query CCDS DB by GeneID:28010See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119975.2 ENSMUSP00000113897.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119975.2Link to Ensembl Protein Viewer:ENSMUSP00000113897.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000119975Re-query CCDS DB by Protein ID:ENSMUSP00000113897
Current member NCBI NM_001374704.1 NP_001361633.1 Accepted alive Link to Nucleotide Sequence:NM_001374704.1Link to Protein Sequence:NP_001361633.1Re-query CCDS DB by Nucleotide ID:NM_001374704Re-query CCDS DB by Protein ID:NP_001361633Link to BLAST:NP_001361633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361633.1 389 A2A7Y5-2 389 100% 0 0

Chromosomal Locations for CCDS 89855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147860936 147861013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147861354 147861491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147862246 147862342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147862438 147862567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147862897 147862949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147863028 147863136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147865189 147865270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147865655 147866014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147866235 147866357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGCCCAATATGGCAGAGACTAAAGACCCCGTTCGGCTTCGGCTGCTTAGCCTGGAGCTCCTGAAGCAGC
TTTGGGCTGGGCACGAAGCCATGTGTCGGTCGGTGGTGAGAGCAGCATCAGGGTCAAACTTGGATTGTAG
CAGCAACAACTTAGAGATGCCACTGTCCCAAGAGACTTCTTCCGCTTCCTCAGTGGCCCCCAGCTCACAG
GACAAAAGACACATGTTGGACCCACTGGACAGTCGTCGAGATGACACGTTTGATGTGGCCTGGTATGTCA
AGTTCAACTCCAGGATGGACTCTTTCCTACCTGCCACAGGCCAACACCAGGAGCCCCAGGAAGAACTACG
GCCCCCCTCAGTACCCTTGCTAGCCACTCAGGGTCTGAAGGGGCCAGTGTCTTTGGGAGGACCAAAAGGT
CTGGGACCTGACAAGACACAGGTCCCAAGGTCCATCCTGTCACGACTAAGCAAGCCATCTAAGCCCAGAG
TGACCTCCCAGGAGTCTGCAGTGCCTGAGAGCAGCTGGCACTCTAGGCCATACCTAGGCTATGATTGGAT
TGCAGGGTCCCTGGACAATAGCTCTCCAGTCACTAGTGAGCCCGAGGCCTTCTTCTCTATGCTGCAGAGG
TTTCGAGAAAACAACAAAGAGGATTGTGTTTGCAACTCCCCTGAAGCTGTGTTCCCAGGCCTGCAAGAGA
GCAGCGGTGTGGAAGAGGACCACGAGTGTATGTACTGTTACCGTATCAACCGCCGGCTGTTTCCTGAGCC
TGTGGATCCAGGCGCCCCTTGCCGTCTGTGTGGGATACCCCGGGATGAGAAGGGCCCCGGAACTCTGGTG
GAGCCAGTGCAAGTCAGGGTGAGCATCCCCCTATCCATCATGGACCCTCCACACCAGTATCGAATTCACA
GAAGGAAGAGCTTTGATGCATCTGACACTCTAGCTTTGCCTCGGCACTGTCTGCTGGGCTGGGACATCCT
CCCTCCAAAGTCAGAGAAAACGTCTGTCCCCAAGAGCCTGGACCTCTGGTCCTCCGTGTCCTATGGAGCA
GGGCAGCGTCGGGATCTGTCAGCCACTAGCCCACCCTGTCAGAAGCCCAGAGGACAGACGGCCCAGAAGA
CAACAGTATTCTACCAGTGCCAACAGCCTCCCCTGAGGAGAAGCCCCTGA

Translation (389 aa):
MPNMAETKDPVRLRLLSLELLKQLWAGHEAMCRSVVRAASGSNLDCSSNNLEMPLSQETSSASSVAPSSQ
DKRHMLDPLDSRRDDTFDVAWYVKFNSRMDSFLPATGQHQEPQEELRPPSVPLLATQGLKGPVSLGGPKG
LGPDKTQVPRSILSRLSKPSKPRVTSQESAVPESSWHSRPYLGYDWIAGSLDNSSPVTSEPEAFFSMLQR
FRENNKEDCVCNSPEAVFPGLQESSGVEEDHECMYCYRINRRLFPEPVDPGAPCRLCGIPRDEKGPGTLV
EPVQVRVSIPLSIMDPPHQYRIHRRKSFDASDTLALPRHCLLGWDILPPKSEKTSVPKSLDLWSSVSYGA
GQRRDLSATSPPCQKPRGQTAQKTTVFYQCQQPPLRRSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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