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Report for CCDS89902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89902.1 Public Mus musculus 5 Slc4a1ap 23 108 98 CCDS HistoryNCBI Gene:20534Re-query CCDS DB by CCDS ID:89902.1Re-query CCDS DB by GeneID:20534See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201858.3 ENSMUSP00000143960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201858.3Link to Ensembl Protein Viewer:ENSMUSP00000143960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201858Re-query CCDS DB by Protein ID:ENSMUSP00000143960
Original member Current member NCBI NM_001359157.1 NP_001346086.1 Accepted alive Link to Nucleotide Sequence:NM_001359157.1Link to Protein Sequence:NP_001346086.1Re-query CCDS DB by Nucleotide ID:NM_001359157Re-query CCDS DB by Protein ID:NP_001346086Link to BLAST:NP_001346086.1

Chromosomal Locations for CCDS 89902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31527022 31527684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31528043 31528238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31530633 31530755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31531973 31532033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31532444 31532583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31534045 31534205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31534858 31534927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31536138 31536328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGCTGATCCTACCCCTCAGCTAGATGCGCCAGCTCCCCAGGAAGTCAGTAGCGAGTTTAAGAAGCCGG
TTTTACCAGTGCCTTCCGCAGTACGGGGTAAGGCTCCGGCCTCCAGTCCCTCCGTTTCTGAGGATGTGAA
GAAAGAATGTCTCGCGGCGCAGCTGGACTCTGGATGTGAGGAGCCCGAGGTCCCGCCACCGCAGCCGGAC
AGCCAGGAGACCGGGGGTCCACCGGTGGAGCAACTCCGCTCCCCGCGGGTAGCTCCTGCGTCTGGCGGTC
CGACCCGGGCTCCTCCGTACCGAGAGCCATCGTGGGGCAGCCCAGCCACGGCCCCCTACAGTCTCGAAAC
CCTGAAGGGTGGCACCATCCTTGGCACCCGCACCTTGAAAGACACGAGCTGCTGCTTTTTCGGGAGACTT
GCTAGTTGTGACATATGTCTGGAGCATCCTTCCGTGTCTCGGTACCATGCTGTACTACAGCACCGGGGGG
CGGATCCCAGCGGAGACTCTGAGGGTCATGAGCAGGGCTTTTATCTCTACGATCTGGGAAGTACCCACGG
CACGTTCCTCAACAAAACTCGCATCCCACCCCGCACTTACTGTAGAGTCCACGTCGGGCATGTAATGCGC
TTTGGAGGCAGCACTCGGCTCTTTATCCTTCAGGGACCAGAGGAAGACCGAGAGGCAGAATCTGAATTAA
CAGTAACACAGTTGAAGGAATTGCGTAAACAGCAGCAGATATTATTGGAGAAGAAGATGTTAGGTGAAGA
CTCAGATGAAGAAGAAGAAGCAAATACCACTGAAGGGAAGAGCAGTAGAAGTGGTCAAGATGATGAGCTG
GGCTGCACGTGGGGAATGGGAGAAGATGCTGTGGAGGATGAAGCTGAAGAGAACCCCATTGCCTTAGATT
TTCAGCAGGACCGGGAAGCGTTTTATATAAAGGATCCAAAGAAGGCTCTTCAAGGCTTCTTTGACCGAGA
AGGAGAAGAGTTAGAATATGAATTTGATGAGCAAGGACACAGCACTTGGCTCTGCAGGGTGAGGTTACCT
GTAGATGATTCAACTGGGAAACAGCTGGTGGCTGAGGCCATTCACTCAGGAAAGAAAAAGGAAGCAATGG
TACAGTGCTCGCTGGAAGCCTGCCGGGTCCTTGATACACTGGGCTTGCTACGGCAGGAAGCAGTATCTCG
GAAAAGGAAAGCCAAGAACTGGGAAGATGAGGATTTTTATGATAGTGACGATGATACATTCCTCGATCGG
ACTGGCCTGGTAGAGAAGAAGCGCCTGAACCGGATGAAGAAGGCTGGGAAGCTTGATGAGAAGCCAGAAA
CTTTTGAGTCACTGGTTGCAAAGTTAAATGATGCCGAAAGGGAACTCGCCGAAATTTCTGAAAGGCTCAA
GGCTTCAAGCAAAGTTCTGTCAGAGCCATCATCTCAGGACTCTTTAGATGCATTCATGTCAGAAATGAAA
TCAGGCAGCACATTAGATGGGGTGTCCCGGAAGAAACTTCACCTGAGGACTTTTGAACTAAGAAAAGAAC
AACAGCGACTTAAAGGGTTAATAAAACTTGTAAAGCCGGCAGAGATCCCAGAACTAAAAAAGTAA

Translation (534 aa):
MADPTPQLDAPAPQEVSSEFKKPVLPVPSAVRGKAPASSPSVSEDVKKECLAAQLDSGCEEPEVPPPQPD
SQETGGPPVEQLRSPRVAPASGGPTRAPPYREPSWGSPATAPYSLETLKGGTILGTRTLKDTSCCFFGRL
ASCDICLEHPSVSRYHAVLQHRGADPSGDSEGHEQGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVMR
FGGSTRLFILQGPEEDREAESELTVTQLKELRKQQQILLEKKMLGEDSDEEEEANTTEGKSSRSGQDDEL
GCTWGMGEDAVEDEAEENPIALDFQQDREAFYIKDPKKALQGFFDREGEELEYEFDEQGHSTWLCRVRLP
VDDSTGKQLVAEAIHSGKKKEAMVQCSLEACRVLDTLGLLRQEAVSRKRKAKNWEDEDFYDSDDDTFLDR
TGLVEKKRLNRMKKAGKLDEKPETFESLVAKLNDAERELAEISERLKASSKVLSEPSSQDSLDAFMSEMK
SGSTLDGVSRKKLHLRTFELRKEQQRLKGLIKLVKPAEIPELKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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