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Report for CCDS89921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89921.1 Public Mus musculus 5 Stim2 23 108 98 CCDS HistoryNCBI Gene:116873Re-query CCDS DB by CCDS ID:89921.1Re-query CCDS DB by GeneID:116873See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 89921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201469.3 ENSMUSP00000143855.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201469.3Link to Ensembl Protein Viewer:ENSMUSP00000143855.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201469Re-query CCDS DB by Protein ID:ENSMUSP00000143855
Original member Current member NCBI NM_001363348.1 NP_001350277.1 Accepted alive Link to Nucleotide Sequence:NM_001363348.1Link to Protein Sequence:NP_001350277.1Re-query CCDS DB by Nucleotide ID:NM_001363348Re-query CCDS DB by Protein ID:NP_001350277Link to BLAST:NP_001350277.1

Chromosomal Locations for CCDS 89921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 53998884 53999034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54053376 54053506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54075280 54075394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54102575 54102686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54103573 54103688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54104393 54104570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54105221 54105398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54109703 54109870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54110116 54110139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54110537 54110637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54110872 54111110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54115919 54116192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 54118272 54118749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGCTGCTCTTCGGGTTGTTGGTGGCCGGCGTGGCGGACGGATGCGATCTGGTGCCCCGGCACCTCCGCG
GGCGGCGCGCGTCGGGATCGGCCGGAGCGGCGGCGTCTCCTTCGGCTGCGGCTGCGGGCGAGCGCCAGGC
GCTGCTGACAGATCCCTGTATGTCGCTGAGTCCACCTTGCTTCACTGAAGAAGACAGGTTTAGCTTGGAA
GCACTTCAGACAATACACAAACAGATGGACGACGACAAGGACGGCGGGATCGAAGTGGACGAGAGTGATG
AGTTTATCAGAGAAGATATGAAATATAAAGATGCTACGAATAAACATAGTCACCTGCACAGAGAAGATAA
GCACATAACTGTTGAGGATTTGTGGAAACAGTGGAAAACATCAGAAGTTCACAATTGGACACTTGAGGAT
ACCCTGCAGTGGTTAATAGAATTTGTTGAACTGCCACAATATGAGAAGAATTTTAGGGATAATAATGTGA
AGGGAACAACACTCCCCAGGATAGCAGTTCATGAAACTTCATTTATGATTTCCCAGTTGAAAATCAGCGA
CCGAAGTCACAGACAGAAACTCCAACTCAAAGCCCTGGATGTGGTTCTGTTTGGGCCTCTGACACGCCCA
CCTCATAACTGGATGAAGGATTTTATTCTCACAATTTCCATAGTAATTGGTGTTGGGGGTTGTTGGTTTG
CTTATACACAAAATAAGACATCAAAGGAACATGTTGCAAAAATGATGAAAGACTTAGAGAGTCTGCAGAC
TGCAGAGCAGAGTCTCATGGACTTACAAGAGAGACTTGAAAAGGCACAGGAAGAAAACAGAACTGTTGCT
GTAGAAAAGCAAAATCTGGAACGGAAAATGATGGATGAAATCAACTATGCCAAGGAGGAGGCCTGTCGGC
TGCGGGAGCTGAGGGAGGGCGCAGAGTGTGAGCTGAGCAGGCGCCAGTATGCAGAGCAGGAACTGGAGCA
GGTCCGCATGGCTCTAAAAAAGGCCGAAAAGGAGTTTGAACTGAGAAGCAGCTGGTCTGTCCCTGACGCA
CTACAGAAATGGCTTCAGCTAACACACGAAGTTGAAGTACAGTACTACAATATTAAGAGGCAAAATGCTG
AGATGCAGCTAGCCATCGCTAAGGACGAGGTCGCTGCCTCCTATCTCCTGCAGGCAGAAAAAATTAAAAA
GAAGAGAAGCACAGTCTTTGGGACCCTGCACGTTGCACACAGCTCCTCCCTGGACGAAGTAGACCACAAG
ATTCTGGAAGCCAAGAAAGCCCTCTCTGAGCTGACCACGTGCTTGCGAGAACGGCTTTTTCGCTGGCAGC
AGATTGAGAAGATCTGTGGCTTTCAGATAGCTCACAACTCTGGGCTCCCCAGTCTCACCTCCTCTCTGTA
CTCTGACCACAGCTGGGTGGTGATGCCTAGAGTCTCCATTCCACCCTACCCTATTGCTGGAGGAGTTGAT
GACCTCGATGAAGACACACCCCCAATCGTGCCACAGTTTCCAGGGACCGTGGCTAAACCTGCAGGATCTT
TAGCCAGAAGCAGTAGTTTATGCCGCTCTCGTCGCAGCATCGTGCCATCCTCCCCACAGTCTCAGCGAGC
TCAGCTTCCTGCTCATGCTCCTCTGGCAGCCCACCCTCGGCACCCTCACCATCCGCAGCATCCCCAGCAC
TCGTTGCCTTCCCCAGATCCAGACATCCTGTCTGTGTCAAGTTGCCCTGCTCTGTATCGGAACGAAGAGG
AGGAGGAGGCTATCTACTTCACTGCTGAGAAACAATGGGAAGTGCCAGACACAGCTTCAGAATGTGACTC
CTTAAACTCTTCCAGTGGGAGAAAACCGTCTCCCCCTTCAAGCCTTGAGATGTACCAAACATTGTCTTCC
CGAAAAATCTCAAGAGACGAGCTTTCCCTGGAGGACTCTTCCAGGGGGGAGTCACCCGTGACAGCAGATG
TCTCCCGGGGCTCCCCTGAGTGTGTGGGTCTGACGGAGACCAAGAGCATGATCTTCAGCCCTGCAAGCAG
AGTGTACAATGGCATCCTGGAGAAATCCTGCAGCATGCACCAGCTCTCCAGCGGCATCCCGGTGCCTCAT
CCCCGACACACATCGTGCTCCTCAGCCGGCAATGATAGCAAGCCAGTTCAGGAAGCCTCGAATGTTTCCA
GAGTAAGCAGCATCCCACATGACCTCTGTCATAATGGTGAGAAAAGCAAAAAGCCATCCAAAATCAAAAG
CCTTTTCAAGAAGAAGTCTAAGTGA

Translation (754 aa):
MLLFGLLVAGVADGCDLVPRHLRGRRASGSAGAAASPSAAAAGERQALLTDPCMSLSPPCFTEEDRFSLE
ALQTIHKQMDDDKDGGIEVDESDEFIREDMKYKDATNKHSHLHREDKHITVEDLWKQWKTSEVHNWTLED
TLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHETSFMISQLKISDRSHRQKLQLKALDVVLFGPLTRP
PHNWMKDFILTISIVIGVGGCWFAYTQNKTSKEHVAKMMKDLESLQTAEQSLMDLQERLEKAQEENRTVA
VEKQNLERKMMDEINYAKEEACRLRELREGAECELSRRQYAEQELEQVRMALKKAEKEFELRSSWSVPDA
LQKWLQLTHEVEVQYYNIKRQNAEMQLAIAKDEVAASYLLQAEKIKKKRSTVFGTLHVAHSSSLDEVDHK
ILEAKKALSELTTCLRERLFRWQQIEKICGFQIAHNSGLPSLTSSLYSDHSWVVMPRVSIPPYPIAGGVD
DLDEDTPPIVPQFPGTVAKPAGSLARSSSLCRSRRSIVPSSPQSQRAQLPAHAPLAAHPRHPHHPQHPQH
SLPSPDPDILSVSSCPALYRNEEEEEAIYFTAEKQWEVPDTASECDSLNSSSGRKPSPPSSLEMYQTLSS
RKISRDELSLEDSSRGESPVTADVSRGSPECVGLTETKSMIFSPASRVYNGILEKSCSMHQLSSGIPVPH
PRHTSCSSAGNDSKPVQEASNVSRVSSIPHDLCHNGEKSKKPSKIKSLFKKKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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