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Report for CCDS89981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89981.1 Public Mus musculus 5 Ccdc60 23 108 98 CCDS HistoryNCBI Gene:269693Re-query CCDS DB by CCDS ID:89981.1Re-query CCDS DB by GeneID:269693See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086483.3 ENSMUSP00000083671.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086483.3Link to Ensembl Protein Viewer:ENSMUSP00000083671.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086483Re-query CCDS DB by Protein ID:ENSMUSP00000083671
Original member Current member NCBI NM_001360005.1 NP_001346934.1 Accepted alive Link to Nucleotide Sequence:NM_001360005.1Link to Protein Sequence:NP_001346934.1Re-query CCDS DB by Nucleotide ID:NM_001360005Re-query CCDS DB by Protein ID:NP_001346934Link to BLAST:NP_001346934.1

Chromosomal Locations for CCDS 89981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 116170342 116170405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116172442 116172549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116180804 116180911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116190060 116190230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116225269 116225351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116288447 116288536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGACCAAAGTGCCAGCCACCAAAAAGTTACAAAAAATCACCAGCAAGAAGGCCCTTTGGCTCTTTTCCA
GCGCAGATCAACTGACTCAGCAGGCCTCAGACAAGACAGCGAAGAACTCCAAATATATAGACAAGGAGAT
AGCAAACCTTAAGAAGGATCTTATGCGAAGCCGCTTCCTGATCCAGTGTGTGAAGATAGGCCGAGGCTAC
TTCAACATCCTGCGAGAGGAAAATGCCATGAAAAAGAAGCAGCAGCTACTCCAGAAGCTGAAGGAGGAGG
AGCTAAACAAGTTCCAGCCGGCCAAGAAGTTCTCAGATATCCACTGCAGGGACAACCTGCTGGCTACCTA
CGACTGTGAGAAGCTAAAGAAGTTGGAGGCCGGGATCATCATCCGCCCGTTCACGCCCATCCACAGCTGT
CTCATGGCGCCCTCCCTGCCTGAGTCTCACGTGGATCCGCTCTTCCGCCAGCTGTGTGCTCTCCACTGGC
TCCTAGAGGCCCTGACCATCGACCACACCCACCACACCATGAGGCCCTTGATTGCCTGTTGGAACCCCAA
AAGGAAGCTGATCATGCAGGACCCAGATTGGGATGAAAACAACGATCGGCCTACACTCCTGTGA

Translation (207 aa):
MTKVPATKKLQKITSKKALWLFSSADQLTQQASDKTAKNSKYIDKEIANLKKDLMRSRFLIQCVKIGRGY
FNILREENAMKKKQQLLQKLKEEELNKFQPAKKFSDIHCRDNLLATYDCEKLKKLEAGIIIRPFTPIHSC
LMAPSLPESHVDPLFRQLCALHWLLEALTIDHTHHTMRPLIACWNPKRKLIMQDPDWDENNDRPTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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