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Report for CCDS90340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90340.1 Public Mus musculus 7 Btbd16 23 108 98 CCDS HistoryNCBI Gene:330660Re-query CCDS DB by CCDS ID:90340.1Re-query CCDS DB by GeneID:330660See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208593.1 ENSMUSP00000146849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208593.1Link to Ensembl Protein Viewer:ENSMUSP00000146849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208593Re-query CCDS DB by Protein ID:ENSMUSP00000146849
Current member NCBI NM_001374628.1 NP_001361557.1 Accepted alive Link to Nucleotide Sequence:NM_001374628.1Link to Protein Sequence:NP_001361557.1Re-query CCDS DB by Nucleotide ID:NM_001374628Re-query CCDS DB by Protein ID:NP_001361557Link to BLAST:NP_001361557.1

Chromosomal Locations for CCDS 90340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130777128 130777145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130779557 130779705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130784261 130784334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130785942 130786085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130788760 130788849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130790222 130790336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130795309 130795378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130796972 130797102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130805821 130805940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130815716 130815807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130819018 130819100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130820438 130820515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130821430 130821528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130823154 130823342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130824309 130824377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGAAAATGTTGAATTCATGCAGGACTCGGCTGGAGCGCAGGATTGTTGGTGCAACCAACCGATGGCGTT
TTCCCCAAGACCATTTCTGCGGAGACCTGTTGGCACTCTCCCAGATGTGCAATGTTTTAAATGTAGATCT
TGACGAAGCTCTGAAGAACCCAGACAGATTATGTATCTCAAAATTCCAGAAGCTTTTCTCCGAAAATATC
ATGAACAGTGGCACCCAAAGCGGGGAAGCAGACGTGATCCTTGAATGCCTCGGCTTCAAGTGGGAACTCC
ACCACCCTCAGATCTTTCAGTCTGGGACCTTGGCCAAGCTCTACCTGACAGCCTTGATACAGAACATGAA
AAGCTCCCAGAGGGAGCTGGACAAGGTTCAGAAAGCTCATCCATCCGGGAAGATCAAAAAAAGGTCCCCT
GTAAAGAAGATCATCATTTCCATGAGGATCAATGACCCGGCAGTCACCAGAGTTGCCTTCGCCCTGGCCC
TGAAGAACCTCTACATGAAGGAGGTGGAAATGACCGTGGACAATGTGCTGGGCGTGCTGGCTTCTGCTCA
CATCCTCCAGTTCAACCGACTATTTCAAAAGTGTGTCAACATGATGATGAACAGACTCGCACCAAGCACC
ATCAAGAACTTCTACTTGGCCGGCTGTAAGTACGAAGAAGAGCAGCTCACCATGGCCTGTGAGAAGTGGC
TGGCAATGAACCTGGTCCCTCTAGTGGGGACTCAGATCCACCTCCGACAGATCCCTGAACCTCTGCTGTA
CAAGGTGCTGAAGTCGCCCAGGTTGTTCACCTTCAGTGAGTTCCATCTCCTGAAAACCTTACTCATGTGG
GTTTACCTACAGATGAACTGCAAGGTTCAGATGGTCCCAATCCACGAGACCATTTTGGCATTTTTTAACA
GCTTTCCCAAGAAGTGCTGCTTCCTAGAACAGGATCCAGGACAGAACTGGATGCCACTCTTCCTTTGCCT
GCGTCTGCACGGCATCACCAGTGGCAAGGATCTGGAGGTGTTGAAGCACATTAATTTCTTCCCTGAGTCC
TGGCTGGTCCGGGTTACAGCCAACCATTACCACGCACTGGAGAGCGGGGGCAACATGGTCCACCTGAAAG
ATCTTTCCACACAGGCCATGAGGTTCGGGCTGCTCTTTAGGCAGGAATACACCACTTACTCGGAAAGGAT
TTCTATATACGGATACTTCTTTGAGATAAAGGGAATCAAACACGACCCTACCTCTTACAGTTTTTCTATG
CAGAGAATAAAACATACAGACTTGGAGTGCCCCTCACCAGTCTGTGAGCACAGTACCATCAGCTTGAGGT
CGGAGCGCCTGGTGAAGTATGAGATCCAAGCCCAGACGCTGGTGGACGGCAGGTGGCAGGAGTTCAGGAC
CAACCAAATCATGCAAAAGTTTGGGTTTATCAAGCCAGGCTGCAAAAGCCACGTCTTGAAAATCCAAACC
GTGGGCATCCCGATCTACGCCAGCTTTGCCTTCATCTTCCCAGCATCTTGA

Translation (506 aa):
MKMLNSCRTRLERRIVGATNRWRFPQDHFCGDLLALSQMCNVLNVDLDEALKNPDRLCISKFQKLFSENI
MNSGTQSGEADVILECLGFKWELHHPQIFQSGTLAKLYLTALIQNMKSSQRELDKVQKAHPSGKIKKRSP
VKKIIISMRINDPAVTRVAFALALKNLYMKEVEMTVDNVLGVLASAHILQFNRLFQKCVNMMMNRLAPST
IKNFYLAGCKYEEEQLTMACEKWLAMNLVPLVGTQIHLRQIPEPLLYKVLKSPRLFTFSEFHLLKTLLMW
VYLQMNCKVQMVPIHETILAFFNSFPKKCCFLEQDPGQNWMPLFLCLRLHGITSGKDLEVLKHINFFPES
WLVRVTANHYHALESGGNMVHLKDLSTQAMRFGLLFRQEYTTYSERISIYGYFFEIKGIKHDPTSYSFSM
QRIKHTDLECPSPVCEHSTISLRSERLVKYEIQAQTLVDGRWQEFRTNQIMQKFGFIKPGCKSHVLKIQT
VGIPIYASFAFIFPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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