NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90436.1 Public Mus musculus 8 Ces1h 23 108 98 CCDS HistoryNCBI Gene:75704Re-query CCDS DB by CCDS ID:90436.1Re-query CCDS DB by GeneID:75704See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG
Inferred exon combination

Sequence IDs included in CCDS 90436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145041.3 ENSMUSP00000121729.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145041.3Link to Ensembl Protein Viewer:ENSMUSP00000121729.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000145041Re-query CCDS DB by Protein ID:ENSMUSP00000121729
Original member Current member NCBI NM_001370830.1 NP_001357759.1 Accepted alive Link to Nucleotide Sequence:NM_001370830.1Link to Protein Sequence:NP_001357759.1Re-query CCDS DB by Nucleotide ID:NM_001370830Re-query CCDS DB by Protein ID:NP_001357759Link to BLAST:NP_001357759.1

Chromosomal Locations for CCDS 90436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 93352024 93352195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93352437 93352509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93353441 93353572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93357001 93357148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93357417 93357497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93358754 93358894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93361597 93361635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93362867 93362971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93363625 93363729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93366685 93366838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93370060 93370193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93372518 93372665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93374409 93374616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 93379677 93379725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGTGCCTCTACGCTCTGATTCTGCTGTCCCTCTCAGCCATGGCATGGGGAGGGTACCCATCCTCACCCC
CTGTGGTGAACACCACTCATGGCAAAGTCCTGGGGAAGTACATCAGCTTAGAAGGATTCACACAACCTGT
GGCCGTCTTCCTGGGAGTCCCCTTTGCCAAGCCCCCTCTTGGATCCCTGAGATTTGCTCCACCACAGCCT
CCAGAGCCCTGGAGCTTTGTGAAGAATGCCACCTCGTACCCTCCTATGTGCTCTCAAGATGCAGTGTTAG
GGCAGATGGTCAATGACCTTATAATAAACAACAAGGAGAAAATTCGTCTGCGGTTTTCAGAAGACTGTCT
CTACCTGAATGTTTACACGCCTGTGGACTTGATGAAGAATACCAACAGGCTGCCAGTGATGGTGTGGATC
CATGGAGGTGGACTGGTAGTGGGCGGGGCATCTGCCTATGATGGACGAACCCTCTCAGCCCATGAAAATG
TGGTGGTGGTGACCATTCAGTACCGCCTGGCCATCTGGGGATTCTTCAGCACTGGAGATGAACACAGCCG
GGGGAACTGGGGTCACTTGGACCAGCTAGCTGCACTGCATTGGATCCAGGACAACATTGCCAATTTTGGA
GGGGACCCTGGTTCTGTGACCATCTTTGGACAGTCAGCAGGAGGTGAAAGTGTCTCTGTTCTTGTATTGT
CTCCTCTGGCCAAGAACCTCTTCCATAGAGCCATTTCCCAGAGTGGTGTGGTCTTCACTTCTGGTTTGTT
TATGGAGGATGCAAGTTCAGTGACTGAACAAATTGCTGTTACTGCTGGCTGTAAGACCACCACATCCGCT
GTCATTGTTCACTGCTTGCGTCAGAAGACGGAGGAGGAGCTCTTAGAGATCATGCAAAAAATGAACCTTT
TTAAGCTTGATGCACAAGAAAATACCAAAAAGAACTATCCTTTTTTGCCCACCGTGCTTGATGGAGTGGT
GCTGCCAAAGGCACCAGAAGCGATTCTGGCTGAGAAGAACTTCAACACAGTGCCCTACATCGTGGGAATC
AACAAGCAAGAGTTTGGCTGGACTCTGCCCATGATAATGGAATTTCCACCAACTGATGTAAAACTGGACA
AGAAGGTCATCTCTCTGTTCCTGAGGAAGTTGGCGTATTTCTTTAACATACCAGAGGATGGAATTCCAGT
TGCCATTGAGAAATACTCAAAAGGCACAGATGACCCCATCCAAAATAGAGTCTGGCTCCTACAGTTGATT
GGGGATGTGATGTTTGGTATACCATCTGTGATTGTGTCTCGTGGCCACAGAGATGCTGGAGCCCCAACCT
ACATGTACGAATTTCAGTCTCGTCCAAGCTTCTCATCAGAATTGAAACCCAAGACAGTGACTGGAGACCA
TGGAGATGAAGTCTATTCTGTCTTTGGTGCCCCGATTTTAAGAGAGGGTTCCTCAGAAGAAGAGATTAAC
CTCAGCAAGATGATGATGAAATTCTGGGCCAACTTTGCTCGGAATGGGAATCCCAATGGTCAGGGGCTGC
CCCATTGGCCAGAGTATAACCAGAAGAAAGGTTACCTGCAGATTGGAGCCACCACCCAACAAGCCCAGGG
TCTGAAAGATAAGGAAGTGTCTTTGTGGACTGAGCTCAGGGCCAAGAAACCACCACAGACAGGACACACT
GAGCTATGA

Translation (562 aa):
MCLYALILLSLSAMAWGGYPSSPPVVNTTHGKVLGKYISLEGFTQPVAVFLGVPFAKPPLGSLRFAPPQP
PEPWSFVKNATSYPPMCSQDAVLGQMVNDLIINNKEKIRLRFSEDCLYLNVYTPVDLMKNTNRLPVMVWI
HGGGLVVGGASAYDGRTLSAHENVVVVTIQYRLAIWGFFSTGDEHSRGNWGHLDQLAALHWIQDNIANFG
GDPGSVTIFGQSAGGESVSVLVLSPLAKNLFHRAISQSGVVFTSGLFMEDASSVTEQIAVTAGCKTTTSA
VIVHCLRQKTEEELLEIMQKMNLFKLDAQENTKKNYPFLPTVLDGVVLPKAPEAILAEKNFNTVPYIVGI
NKQEFGWTLPMIMEFPPTDVKLDKKVISLFLRKLAYFFNIPEDGIPVAIEKYSKGTDDPIQNRVWLLQLI
GDVMFGIPSVIVSRGHRDAGAPTYMYEFQSRPSFSSELKPKTVTGDHGDEVYSVFGAPILREGSSEEEIN
LSKMMMKFWANFARNGNPNGQGLPHWPEYNQKKGYLQIGATTQQAQGLKDKEVSLWTELRAKKPPQTGHT
EL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH