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Report for CCDS90464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90464.1 Public Mus musculus 8 Adat1 23 108 98 CCDS HistoryNCBI Gene:30947Re-query CCDS DB by CCDS ID:90464.1Re-query CCDS DB by GeneID:30947See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000139820.7 ENSMUSP00000117279.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139820.7Link to Ensembl Protein Viewer:ENSMUSP00000117279.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139820Re-query CCDS DB by Protein ID:ENSMUSP00000117279
Original member Current member NCBI NM_001357185.1 NP_001344114.1 Accepted alive Link to Nucleotide Sequence:NM_001357185.1Link to Protein Sequence:NP_001344114.1Re-query CCDS DB by Nucleotide ID:NM_001357185Re-query CCDS DB by Protein ID:NP_001344114Link to BLAST:NP_001344114.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344114.1 454 Q9JHI2-2 454 100% 0 0

Chromosomal Locations for CCDS 90464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111972101 111972191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111978039 111978138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111979299 111979444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111982162 111982765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111987122 111987252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111987823 111987877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111989851 111989919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111990205 111990373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGTGGACCGCGGATGAGATCGCTCAGCTGTGCTATGCACACTATAACGTCAGACTGCCCAAGCAGGGGA
AGCCTGAGCCAAATCGTGAGTGGACCTTGCTGGCAGCTGTGGTGAAGATTCAGGCTTCAGCTAACCAAGC
TTGTGACATCCCTGAGAAGGAAGTGCAAGTGACAAAGGAAGTTGTCTCAATGGGAACAGGAACAAAATGC
ATAGGCCAGTCCAAGATGCGAGAGAGCGGGGACATCCTCAATGACAGCCATGCTGAGATCATAGCCAGAA
GGAGTTTCCAGAGATACCTTCTCCATCAGCTCCATTTGGCAGCCGTCCTGAAAGAGGATAGCATCTTTGT
TCCAGGGACCCAAAGAGGACTGTGGAGGCTCAGACCTGACCTGTCGTTTGTGTTTTTCTCTAGCCACACA
CCCTGTGGGGATGCCTCCATCATCCCGATGCTCGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAA
GTTGGGCCAACAACTCACCTGTACAAGAGACTGAGAATCTAGAGGATTCTAAAGATAAAAGGAACTGTGA
AGATCCCGCCAGTCCTGTAGCCAAGAAGATGAGGCTGGGAACACCTGCCAGGTCACTCTCCAATTGTGTA
GCTCACCATGGGACCCAGGAAAGTGGTCCAGTCAAACCAGATGTCAGCAGCTCTGATCTCACCAAGGAGG
AACCAGATGCTGCCAATGGAATAGCTTCAGGTAGCTTCAGAGTGGTGGATGTGTACAGGACGGGAGCCAA
GTGTGTTCCTGGAGAAACTGGAGACTTGAGAGAGCCAGGTGCTGCCTACCACCAGGTGGGGCTACTTCGT
GTAAAACCTGGCAGGGGAGACAGGACATGCTCCATGTCCTGCAGTGACAAGATGGCAAGGTGGAATGTCC
TCGGATGCCAGGGCGCACTGCTGATGCACTTCCTGGAGAAGCCTATCTACCTGTCAGCTGTGGTCATCGG
GAAGTGCCCGTACAGCCAGGAAGCCATGAGGAGAGCATTGACTGGCAGGTGTGAGGAAACCTTGGTTTTA
CCCAGAGGCTTTGGAGTTCAAGAACTGGAAATACAGCAGTCGGGTTTACTGTTTGAACAGAGCCGCTGTG
CGGTGCACAGGAAAAGAGGTGACAGTCCAGGCCGACTCGTCCCCTGTGGGGCAGCTATCAGCTGGAGCGC
TGTCCCTCAGCAGCCCTTGGATGTTACAGCCAATGGTTTTCCACAGGGAACAACAAAGAAAGAGATTGGA
AGCCCTAGGGCCAGATCCCGAATCAGCAAGGTGGAACTCTTTAGATCATTCCAGAAGCTGCTGAGCAGCA
TTGCAGATGACGAGCAGCCAGACTCCATCAGGTGA

Translation (454 aa):
MWTADEIAQLCYAHYNVRLPKQGKPEPNREWTLLAAVVKIQASANQACDIPEKEVQVTKEVVSMGTGTKC
IGQSKMRESGDILNDSHAEIIARRSFQRYLLHQLHLAAVLKEDSIFVPGTQRGLWRLRPDLSFVFFSSHT
PCGDASIIPMLEFEEQPCCPVIRSWANNSPVQETENLEDSKDKRNCEDPASPVAKKMRLGTPARSLSNCV
AHHGTQESGPVKPDVSSSDLTKEEPDAANGIASGSFRVVDVYRTGAKCVPGETGDLREPGAAYHQVGLLR
VKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPIYLSAVVIGKCPYSQEAMRRALTGRCEETLVL
PRGFGVQELEIQQSGLLFEQSRCAVHRKRGDSPGRLVPCGAAISWSAVPQQPLDVTANGFPQGTTKKEIG
SPRARSRISKVELFRSFQKLLSSIADDEQPDSIR


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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