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Report for CCDS90582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90582.1 Public Mus musculus 9 Neo1 23 108 98 CCDS HistoryNCBI Gene:18007Re-query CCDS DB by CCDS ID:90582.1Re-query CCDS DB by GeneID:18007See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214547.1 ENSMUSP00000150600.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214547.1Link to Ensembl Protein Viewer:ENSMUSP00000150600.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214547Re-query CCDS DB by Protein ID:ENSMUSP00000150600
Original member NCBI NM_001042752.1 NP_001036217.1 Updated not alive Link to Nucleotide Sequence:NM_001042752.1Link to Protein Sequence:NP_001036217.1Re-query CCDS DB by Nucleotide ID:NM_001042752Re-query CCDS DB by Protein ID:NP_001036217
Current member NCBI NM_001042752.2 NP_001036217.1 Accepted alive Link to Nucleotide Sequence:NM_001042752.2Link to Protein Sequence:NP_001036217.1Re-query CCDS DB by Nucleotide ID:NM_001042752Re-query CCDS DB by Protein ID:NP_001036217Link to BLAST:NP_001036217.1

Chromosomal Locations for CCDS 90582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58877274 58877357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58878028 58878164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58880592 58880855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58884470 58884628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58888401 58888493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58888982 58889220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58893875 58894022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58899165 58899233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58902914 58903108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58904444 58904551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58906650 58906788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58906871 58907046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58908404 58908499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58913148 58913342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58914254 58914364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58916959 58917106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58918607 58918656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58921162 58921300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58921767 58921915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58925762 58925916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58930956 58931175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58955959 58956079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58957898 58958052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58978625 58978761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58982076 58982229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58985601 58985876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58990191 58990508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59035966 59036128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4398 nt):
ATGGCGGCGGAGCGCGAAGCCGGGCGACTCCTCTGCACCTCCTCCTCCCGGCGCTGCTGTCCGCCACCGC
CGCTGCTGCTGTTGCTGCCGCTGCTGCTGCTGCTCGGACGCCCGGCGTCCGGCGCCGCGGCCACGAAGAG
CGGCTCCCCGCCGCAGTCCGCAGGAGCCAGTGTTCGAACATTCACTCCGTTTTATTTTCTGGTGGAGCCA
GTAGACACCCTCTCAGTTAGAGGCTCTTCTGTTATATTAAATTGCTCGGCATATTCTGAGCCCTCTCCAA
ACATTGAATGGAAGAAAGATGGGACTTTTTTAAACTTAGAATCAGATGATCGACGCCAGCTACTCCCAGA
TGGATCTTTATTCATCAGCAACGTGGTGCATTCCAAACACAATAAGCCTGACGAAGGTTTCTATCAGTGT
GTAGCCACTGTGGATAATCTTGGAACCATTGTCAGCAGAACAGCCAAGCTCACAGTAGCAGGTCTTCCAA
GATTTACCAGCCAACCAGAACCTTCTTCAGTCTATGTTGGAAACAGTGCAATTCTGAATTGTGAAGTTAA
TGCAGATTTGGTCCCATTTGTTAGGTGGGAACAGAATCGACAGCCCCTTCTTCTAGATGACAGGATTGTC
AAACTTCCAAGTGGAACACTGGTTATCAGCAATGCTACTGAAGGAGATGGGGGACTCTACCGCTGCATTG
TTGAAAGTGGTGGGCCACCAAAGTTTAGTGACGAAGCTGAATTGAAAGTTCTTCAAGATCCTGAGGAAAT
TGTAGACTTGGTATTTCTGATGCGACCATCTTCTATGATGAAAGTCACTGGTCAGAGTGCAGTGTTGCCA
TGTGTTGTCTCAGGGCTTCCTGCTCCAGTTGTTAGATGGATGAAAAACGAAGAAGTGCTTGACACAGAAA
GCTCTGGCAGGTTGGTCTTGCTAGCAGGAGGTTGCTTGGAGATCAGTGATGTCACTGAGGATGATGCTGG
GACTTATTTTTGCATAGCTGATAATGGAAATAAGACAGTTGAAGCTCAGGCGGAGCTTACTGTGCAAGTG
CCACCTGGATTCCTGAAACAACCTGCTAACATATATGCTCACGAATCCATGGACATTGTATTTGAATGTG
AAGTCACTGGGAAGCCAACTCCAACTGTGAAGTGGGTCAAGAATGGGGATGTGGTTATCCCCAGTGATTA
CTTTAAAATTGTAAAGGAACATAATCTTCAAGTTTTGGGTCTGGTGAAATCAGATGAAGGGTTCTATCAA
TGCATTGCTGAGAATGATGTTGGAAATGCACAAGCTGGAGCCCAGCTGATAATCCTTGAGCATGATGTTG
CCATCCCAACATTACCTCCCACTTCACTGACCAGTGCCACTACTGACCATCTAGCACCAGCCACAACGGG
ACCATTACCTTCAGCTCCTCGAGACGTCGTGGCCTCCCTGGTCTCTACTCGCTTCATTAAATTGACATGG
CGTACACCTGCATCAGACCCTCATGGAGACAATCTCACCTACTCTGTGTTCTACACCAAGGAAGGGGTTG
CTAGGGAGCGTGTTGAGAATACCAGCCAGCCAGGAGAGATGCAGGTGACTATTCAAAACTTGATGCCAGC
AACTGTGTACATCTTCAAAGTTATGGCTCAAAATAAGCATGGCTCTGGAGAAAGTTCAGCTCCTCTTCGA
GTAGAGACACAGCCTGAGGTTCAGCTCCCTGGCCCAGCACCTAATATCCGTGCTTATGCAACGTCACCTA
CTTCTATCACTGTCACCTGGGAAACACCGTTATCTGGCAATGGGGAAATTCAAAATTACAAATTGTACTA
CATGGAAAAAGGAACTGATAAAGAACAGGATATTGATGTTTCAAGTCACTCCTACACCATTAATGGACTG
AAGAAATACACAGAATACAGTTTCCGAGTGGTGGCCTACAATAAACATGGTCCTGGAGTTTCTACACAAG
ATGTTGCTGTTCGAACATTATCAGATGTTCCCAGTGCTGCTCCTCAGAATCTGTCCTTAGAAGTGAGAAA
TTCAAAGAGTATAGTGATCCACTGGCAGCCCCCTTCCTCAACCACACAAAATGGGCAGATAACTGGCTAC
AAGATTCGATATCGAAAGGCCTCCCGAAAAAGTGATGTCACTGAGACCTTGGTAACTGGGACACAGCTGT
CTCAGCTGATTGAAGGTCTTGATCGGGGGACAGAATATAACTTCCGAGTCGCTGCTCTCACAGTCAATGG
TACAGGTCCAGCAACTGATTGGCTGTCTGCTGAAACTTTTGAAAGCGACCTAGATGAAACTCGTGTTCCT
GAAGTGCCCAGCTCTCTTCATGTCCGTCCGCTCGTCACTAGCATTGTAGTGAGCTGGACTCCTCCAGAGA
ACCAGAACATTGTGGTCCGAGGTTATGCCATCGGTTACGGCATTGGCAGCCCTCATGCCCAGACCATCAA
AGTGGACTATAAACAACGTTATTACACCATCGAAAACTTGGATCCAAGCTCTCATTACGTGATTACCTTG
AAAGCATTTAACAATGTTGGCGAAGGCATCCCCCTTTATGAGAGTGCTGTGACCAGACCTCACACAGTGC
CAGATCCCACTCCCATGATGCCACCAGTGGGAGTTCAGGCTTCCATTCTGAGTCACGACACCATAAGGAT
TACCTGGGCAGACAACTCCCTGCCCAAACACCAGAAGATTACAGACTCCCGCTACTACACAGTCCGGTGG
AAGACCAACATCCCAGCAAACACGAAGTACAAGAATGCAAATGCAACGACGTTAAGCTATTTGGTTACTG
GTTTAAAGCCAAATACGCTCTATGAGTTCTCTGTGATGGTGACCAAAGGCAGAAGGTCAAGCACGTGGAG
TATGACAGCTCATGGCGCTACCTTTGAATTAGTTCCTACTTCTCCACCTAAGGATGTGACAGTTGTGAGT
AAGGAAGGAAAACCTAGAACCATCATAGTGAATTGGCAGCCTCCCTCTGAAGCTAACGGCAAGATTACAG
GTTACATCATCTATTACAGCACGGATGTGAATGCAGAGATACATGACTGGGTTATTGAACCAGTTGTGGG
AAACAGACTGACTCACCAGATTCAAGAGTTAACACTTGATACGCCATACTACTTCAAAATCCAGGCCCGG
AACTCAAAGGGCATGGGGCCCATGTCTGAAGCTGTACAGTTCAGAACACCTAAAGCCTTAGGGTCAGCAG
GAAAAGGAAGCCGACTACCAGACCTGGGATCTGACTACAAACCTCCAATGAGTGGCAGCAACAGCCCTCA
CGGGAGCCCCACCTCCCCTCTGGACAGCAACATGCTGCTGGTCATCATTGTCTCTGTTGGCGTCATCACT
ATCGTGGTGGTTGTGGTCATTGCTGTCTTTTGTACCCGGCGCACCACCTCTCACCAGAAGAAGAAACGAG
CTGCGTGCAAATCAGTGAATGGCTCCCATAAGTACAAGGGCAATTGCAAAGATGTGAAGCCTCCAGACCT
ATGGATCCATCACGAGAGACTAGAGTTGAAGCCTATTGACAAGTCTCCAGATCCTAACCCTGTCATGACT
GATACTCCAATCCCTCGAAACTCTCAAGATATCACACCAGTGGACAATTCCATGGATAGCAATATCCATC
AAAGGCGGAATTCATACAGAGGGCATGAGTCAGAGGACAGCATGTCTACACTGGCTGGAAGGAGGGGAAT
GAGACCAAAAATGATGATGCCCTTTGACTCTCAGCCACCTCAGCCTGTGATTAGTGCCCATCCCATCCAT
TCCCTCGATAACCCTCACCATCATTTCCACTCCAGCAGCCTCGCTTCTCCAGCCCGCAGTCATCTCTACC
ACCCAAGCAGCCCATGGCCCATTGGCACATCCATGTCCCTTTCAGACAGGGCCAATTCCACAGAATCTGT
TCGAAATACCCCCAGCACGGACACCATGCCAGCGTCCTCGTCTCAGACGTGCTGCACTGACCATCAGGAC
CCTGAGGGTGCTACTAGCTCCTCTTACTTGGCCAGCTCCCAAGAGGAAGACTCAGGCCAGAGTCTTCCCA
CAGCCCATGTCCGCCCTTCCCACCCTCTGAAGAGCTTCGCTGTGCCAGCAATCCCACCCCCAGGACCTCC
TCTCTATGATCCTGCACTGCCAAGCACACCATTACTGTCCCAGCAAGCTCTGAACCATCACATTCACTCA
GTGAAAACAGCCTCCATCGGGACGTTAGGAAGGAGCCGGCCTCCTATGCCAGTGGTTGTTCCGAGTGCCC
CTGAAGTACAGGAGACCACCAGGATGCTGGAAGACTCCGAGAGTAGCTATGAACCAGATGAGCTGACCAA
AGAGATGGCCCACCTGGAAGGACTAATGAAGGACCTAAATGCCATCACAACAGCCTGA

Translation (1465 aa):
MAAEREAGRLLCTSSSRRCCPPPPLLLLLPLLLLLGRPASGAAATKSGSPPQSAGASVRTFTPFYFLVEP
VDTLSVRGSSVILNCSAYSEPSPNIEWKKDGTFLNLESDDRRQLLPDGSLFISNVVHSKHNKPDEGFYQC
VATVDNLGTIVSRTAKLTVAGLPRFTSQPEPSSVYVGNSAILNCEVNADLVPFVRWEQNRQPLLLDDRIV
KLPSGTLVISNATEGDGGLYRCIVESGGPPKFSDEAELKVLQDPEEIVDLVFLMRPSSMMKVTGQSAVLP
CVVSGLPAPVVRWMKNEEVLDTESSGRLVLLAGGCLEISDVTEDDAGTYFCIADNGNKTVEAQAELTVQV
PPGFLKQPANIYAHESMDIVFECEVTGKPTPTVKWVKNGDVVIPSDYFKIVKEHNLQVLGLVKSDEGFYQ
CIAENDVGNAQAGAQLIILEHDVAIPTLPPTSLTSATTDHLAPATTGPLPSAPRDVVASLVSTRFIKLTW
RTPASDPHGDNLTYSVFYTKEGVARERVENTSQPGEMQVTIQNLMPATVYIFKVMAQNKHGSGESSAPLR
VETQPEVQLPGPAPNIRAYATSPTSITVTWETPLSGNGEIQNYKLYYMEKGTDKEQDIDVSSHSYTINGL
KKYTEYSFRVVAYNKHGPGVSTQDVAVRTLSDVPSAAPQNLSLEVRNSKSIVIHWQPPSSTTQNGQITGY
KIRYRKASRKSDVTETLVTGTQLSQLIEGLDRGTEYNFRVAALTVNGTGPATDWLSAETFESDLDETRVP
EVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITL
KAFNNVGEGIPLYESAVTRPHTVPDPTPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW
KTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGATFELVPTSPPKDVTVVS
KEGKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQAR
NSKGMGPMSEAVQFRTPKALGSAGKGSRLPDLGSDYKPPMSGSNSPHGSPTSPLDSNMLLVIIVSVGVIT
IVVVVVIAVFCTRRTTSHQKKKRAACKSVNGSHKYKGNCKDVKPPDLWIHHERLELKPIDKSPDPNPVMT
DTPIPRNSQDITPVDNSMDSNIHQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDSQPPQPVISAHPIH
SLDNPHHHFHSSSLASPARSHLYHPSSPWPIGTSMSLSDRANSTESVRNTPSTDTMPASSSQTCCTDHQD
PEGATSSSYLASSQEEDSGQSLPTAHVRPSHPLKSFAVPAIPPPGPPLYDPALPSTPLLSQQALNHHIHS
VKTASIGTLGRSRPPMPVVVPSAPEVQETTRMLEDSESSYEPDELTKEMAHLEGLMKDLNAITTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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