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Report for CCDS90642.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
90642.1 |
Public |
Mus musculus |
9 |
Gk5 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:235533](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:90642.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:235533](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 90642.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000085217.11 |
ENSMUSP00000082313.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000085217.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000082313.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000085217](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000082313](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001368879.1 |
NP_001355808.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001368879.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001355808.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001368879](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001355808](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001355808.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001355808.1 |
534 |
Q8BX05-1 |
534 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 90642.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1605 nt): ATGTCAGGGCAGCAGGAGCGTGCAGAGCGGCAGCGAGAGGAACTGAGCGCGTCGGCCTCGCCGCCCTCCC GCTTCGTGCTGGGGCTGGACGTGGGCAGCACGGTGATCCGCTGCCACGTCTATGACCAGACGGCGCGAGT GCGAGGCTCCAGCGCGCAGAAGGTAGAAAATGTTTACCCTCAACCTGGCTGGGTTGAAATCGATCCTGAT TCTCTCTGGGCTCAGTTTGTTGCCGTAATAAAAGATGCTGTCAAAGCTGCAGGGGTGCAGATGAATCAAA TTGTCGGTCTTGGCATATCAACACAGAGAGCCACTTTCATTACATGGAACAAGAAAACAGGCCATCATTT TCACAACTTCATTAGCTGGCAAGACCTAAGGGCAGCTGAACTTGTAAAGTCCTGGAATAATTCTCTCATA ATGAAGCTATTGCATGGGGCCACCCGAGTCCTTCATTTCTTCAGTAGAAGTAAAGTAATGCTAACGGTCA GCCGCTTCAATTTCAGCACCCAGCATGCCACCTTAAGATTGACCTGGATTTTACAAAACCTATCTGAGGT GAAAAGGGCAGTTGAAGAAGACAATTGTTGCTTTGGGACGATTGATACCTGGCTGTTATACAAGCTCACG AAAGGTTCTTCCTACGCCACGGATTATTCAAATGCCAGCACCACTGGATTTTTTGATCCCTATGCGATGC GCTGGAGCAGGCTCATAACCACCATGGTCTCCATCCCACTGTCTATCCTGCCTCCTGTGAAGGATACCAG CTATAATTTTGGATCAGTGGATGAGAAGATATTTGGCGTGCCTATACCAGTTGTTGCCTTGGTTGGTGAC CAGCAGTCGGCCATGTTTGGAGAGTGCTGCTTCGAGACGGGAGATGTGAAGCTAACCATGGGAACTGGAA CATTTTTGGATATCAATACTGGAAAAAACCTTCAGCATGTTAATGGAGGCTTTTATCCACTAATTGGATG GAAGATTGGGCAAGAACTTGTATGTTTAGCTGAAGGCAATGCAGGAGACACGGGCACCGCCATAATGTGG GCTCAAAAATTAGATCTCTTCACAGACGCTGCTGAGACTGAAAAAATGGCCCTGAGCCTGGAAGATTCTG AAGGGGTTTACTTTGTTCCGTCGTTTAGTGGATTACAGGCTCCATTAAATGACCCCTGTGCCTGTGCCTC TTTTATGGGTTTGAAGCACTCCACTAATAAATACCATCTTGTCCGAGCAATATTGGAGTCAATAGCTTTC AGGAACAAACAGTTGTACGACATGCTGCAGAGAGAAATCCAGATTCCCGTCACGAACATCCGGGCAGATG GAGGCGTGTGTAACAACGCTTTCGTCATGCAGATGACTTCAGACCTGATAAATGAGAAGATAGACAGACC TGCCCACTTCGACATGTCCTGCTTGGGGGCAGCCTCTCTGGCTGGCCTCGCTGTTGGATTTTGGGCGGAC AAGGAAGAGCTCCAGAAGCTGAGGCAAAGCGAGATGGTTTTCAAGCCTCAGAAGAAGTGGCAGGAATACG AGGTGAATATGGAAAACTGGGTAAAAGCGGTGAAGCGCTCCATGAATTGGTATAACAAGACGTAG
Translation (534 aa): MSGQQERAERQREELSASASPPSRFVLGLDVGSTVIRCHVYDQTARVRGSSAQKVENVYPQPGWVEIDPD SLWAQFVAVIKDAVKAAGVQMNQIVGLGISTQRATFITWNKKTGHHFHNFISWQDLRAAELVKSWNNSLI MKLLHGATRVLHFFSRSKVMLTVSRFNFSTQHATLRLTWILQNLSEVKRAVEEDNCCFGTIDTWLLYKLT KGSSYATDYSNASTTGFFDPYAMRWSRLITTMVSIPLSILPPVKDTSYNFGSVDEKIFGVPIPVVALVGD QQSAMFGECCFETGDVKLTMGTGTFLDINTGKNLQHVNGGFYPLIGWKIGQELVCLAEGNAGDTGTAIMW AQKLDLFTDAAETEKMALSLEDSEGVYFVPSFSGLQAPLNDPCACASFMGLKHSTNKYHLVRAILESIAF RNKQLYDMLQREIQIPVTNIRADGGVCNNAFVMQMTSDLINEKIDRPAHFDMSCLGAASLAGLAVGFWAD KEELQKLRQSEMVFKPQKKWQEYEVNMENWVKAVKRSMNWYNKT
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