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Report for CCDS90657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90657.1 Public Mus musculus 9 Dcaf1 23 108 98 CCDS HistoryNCBI Gene:321006Re-query CCDS DB by CCDS ID:90657.1Re-query CCDS DB by GeneID:321006See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055009.14 ENSMUSP00000060025.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055009.14Link to Ensembl Protein Viewer:ENSMUSP00000060025.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055009Re-query CCDS DB by Protein ID:ENSMUSP00000060025
Current member NCBI NM_001373930.1 NP_001360859.1 Accepted alive Link to Nucleotide Sequence:NM_001373930.1Link to Protein Sequence:NP_001360859.1Re-query CCDS DB by Nucleotide ID:NM_001373930Re-query CCDS DB by Protein ID:NP_001360859Link to BLAST:NP_001360859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001360859.1 1506 Q80TR8-1 1506 100% 0 0

Chromosomal Locations for CCDS 90657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106829069 106829178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106830858 106830934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106834149 106834222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106835516 106835629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106836561 106836698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106838199 106838708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106839032 106839133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106844136 106844294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106846659 106846838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106847781 106847990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106851938 106852107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106854170 106854294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106857824 106859087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106859581 106859779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106860379 106860461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106860968 106861052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106863017 106863250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106863650 106863743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106864516 106864620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106865031 106865104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106865598 106865699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106874056 106874308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106879934 106879992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4521 nt):
ATGACTACAGTAGTGGTACATGTGGACTCCAAAGCTGAGCTCACTACCCTGCTGGAGCAGTGGGAAAAGG
ACCATGGCAGTGGCCAGGATATGGTACCAATCCTTACCAGAATGTCTGAATTAATTGAAAAAGAAACTGA
AGAATATCGTAAAGGAGATCCAGATCCATTTGATGATCGACATCCTGGTCGAGCTGATCCAGAGTGTATG
CTGGGCCATTTGCTGAGAATACTCTTCAAGAATGATGATTTCATGAATGCGCTGGTAAATGCATATGTGA
TGACAAGTAGAGAGCCCCCTTTAAATACTGCAGCTTGCAGACTGCTGCTGGACATCATGCCGGGCCTAGA
AACCGCAGTTGTCTTTCAAGAAAAGGAAGGAATTGTTGAAAATCTTTTCAAATGGGCCCGAGAGGCTGAT
CAGCCACTTAGGACATATTCTACTGGACTGCTGGGAGGTGCTATGGAAAATCAAGATATTGCTGCCAACT
ACAGAGATGAAAATTCACAGTTGGTGGCAATAGTGCTTAGAAGACTGAGGGAGCTCCAGCTTCAAGAAGT
GGCTTTGCGGCAGGACAGTAAGCGTCCTAGTCCACGGAAGCTCTCTTCGGAACCCCTTTTGCCTCTGGAT
GAGGAAGCTGTGGATATGGACTATGGTGACATGGCAGTGGATGTTGTGGATGGAGAACAAGAATCTTCTA
GAGATATGGAGATCTCCTTTCGTCTTGATTCAAGTCACAAGACCAGTAGTAGAGTGAACTCAGCAACTAA
ACCTGAGGAAGGAGGATTAAAGAAAAACAAGTCAGCAAAGCATGGTGACAGAGAGAACTTTAGGAAGGCC
AAGCAGAAGTTGGGCTTCTCATCTTCTGACCCAGATCGTGTGTTTGTTGAGCTGTCTAATAGCAGCTGGT
CAGAAATGTCCCCCTGGGTGATCGGCACCAATTACACTCTCTATCCTATGACTCCTGCTATTGAGCAGAG
ACTTATTCTTCAGTATTTGACCCCTTTAGGAGAGTATCAGGAGTTACTTCCCATATTCATGCAACTTGGA
TCAAGAGAATTGATGATGTTTTATATTGATCTGAAACAGACGAATGATGTCCTGCTTACTTTTGAGGCAC
TCAAGCACCTAGCATCTCTCCTGCTTCATAACAAATTTGCCACAGAATTTGTTGCACATGGTGGAGTACA
GAAATTACTGGAAATTCCTCGTCCTTCTATGGCTGCAACTGGTGTGTCCATGTGCTTGTATTACCTGTCC
TACAATCAGGATGCTATGGAAAGAGTTTGCATGCATCCTCACAATGTTCTATCTGATGTGGTGAACTATA
CCCTGTGGTTAATGGAATGTTCTCATGCTTCAGGATGTTGCCATGCTACTATGTTTTTCTCAATTTGTTT
CTCATTCCGGGCTGTTTTGGAGCTCTTTGACCGTTATGATGGTCTTCGTCGTCTGGTGAACTTGATCAGT
ACTTTGGAGATTTTAAATTTGGAAGACCAGGGTGCACTTTTGAGTGATGATGAAATATTTGCTAGTCGCC
AAACAGGAAAACATACCTGCATGGCTCTGCGCAAGTATTTTGAGGCTCATCTGGCCATTAAATTGGAACA
AGTCAAGCAGTCACTTCAGAGGACTGAGGGTGGTATTCTTGTTCACCCCCAGCCTCCATACAAGGCATGC
TCATATACTCATGAGCAGATTGTAGAAATGATGGAATTTTTGATAGAGTATGGCCCAGCTCAGCTATATT
GGGAACCTGCTGAAGTCTTCCTCAAGCTTTCCTGTGTGCAGCTTTTACTACAGCTTATTTCCATCGCCTG
CAATTGGAAGACCTATTATGCAAGGAATGATACTGTGCGTTTTGCTTTGGATGTCCTTGCTATTCTCACT
GTGGTGCCAAAAATCCAGCTCCAGTTGGCGGAGTCAGTGGATGTACTGGACGAGGCCGGCTCTGCTGTCT
CCACTGTAGGTATCAGCATTATTTTGGGCGTGGCTGAGGGTGAGTTCTTTATCCATGATGCTGAAATTCA
GAAGTCAGCACTTCAAATTATCATCAATTGTGTATGTGGTCCAGATAACCGAATATCCAGTATTGGCAAA
TTTATTTCTGGAACTCCTCGGAGAAAGCTGTCTCAGACTCCCAAGAGTAGTGAGCATACTCTGGCCAAGA
TGTGGAATGTGGTCCAGTCCAACAATGGCATCAAGGTGCTTCTGTCCCTGTTGTCCATCAAGATGCCCAT
TACAGACGCAGACCAGATCCGGGCCCTGGCCTGCAAAGCCCTTGTAGGCCTGTCTCGAAGTAGCACTGTT
CGACAGATCATCAGTAAACTTCCCCTTTTTAGTAGCTGCCAGATTCAACAGCTGATGAAAGAGCCTGTGC
TGCAGGATAAGCGTAGTGACCATGTCAAGTTCTGCAAATACGCTGCTGAGCTCATTGAGCGTGTATCAGG
AAAGCCTCTTCTCATTGGCACTGATGTGTCTCTCGCACGACTGCAGAAAGCAGATGTTGTTGCTCAGTCG
AGGATCTCCTTCCCTGAGAAAGAGCTGCTCCTGTTGATACGGAACCATCTCATTTCTAAAGGGCTTGGAG
AGACAGCAACTGTGCTGACGAGAGAGGCTGACCTGCCCATGACTGCTGCCTCACATTCTTCTGCCTTCAC
CCCAGTGACTGCTGCTGCTTCTCCTGTCTCTCTTCCCCGGACCCCTCGGATTGCCAACGGCATTGCAAGT
CGACTGGGCAGCCATGCTACTGTGGGTGCTTCTGCCCCTTCTGCTCCCCCTGCCCATCCTCCACCACGGC
CCCCCCAGGGTTCATTGCCTTTGCCTGGCCCATCATATGCAGGCAATTCCCCTTTGATTGGTAGGATCAG
TTTTATCAGAGAGAGGCCATCACCGTGCAATGGCAGGAAAATTCGAGTGTTGCGGCAGAAGTCGGACCAT
GGTGCATACAGCCAGAGCCCTGCCATAAAAAAACAATTGGATAGACATCTTCCTTCCCCACCTACGCTGG
ACAGTATCATCACAGAGTATCTTAGAGAGCAACATGCTCGATGCAAGAACCCCGTTGCCACCTGTCCTCC
TTTTTCTCTCTTTACTCCTCATCAGTGTCCTGAACCAAAACAGAGGCGGCAAGCGCCAATAAACTTTACC
TCAAGGCTAAACCGCAGGGCATCATTTCCAAAATATGGAGGGGTAGATGGCGGATGCTTTGATAGGCACC
TTATCTTTAGCAGATTTCGTCCGATTTCAGTATTCCGGGAAGCTAATGAAGATGAAAGTGGCTTCACCTG
TTGTGCATTCTCAGCCCGGGAGCGGTTCCTGATGCTTGGCACTTGTACAGGGCAGCTGAAGCTCTACAAT
GTGTTTAGTGGACAGGAAGAGGCCAGCTATAACTGTCACAACTCAGCCATCACACACCTTGAACCGTCAA
GGGATGGGTCCTTACTTCTGACATCTGCCACTTGGAGCCAGCCTTTGTCTGCACTTTGGGGAATGAAATC
AGTATTTGATATGAAGCATTCCTTCACAGAAGATCACTATGTTGAGTTCAGTAAGCACTCTCAGGATCGG
GTCATAGGCACAAAAGGAGACATTGCCCATATTTATGATATTCAGACTGGCAACAAGCTGTTGACTCTGT
TTAACCCAGATCTTGCCAACAACTACAAGAGGAACTGTGCCACCTTTAATCCTACAGATGATCTTGTCTT
AAATGATGGCGTCCTCTGGGATGTCCGCTCTGCACAGGCCATCCACAAGTTTGACAAGTTCAACATGAAT
ATCAGTGGTGTTTTCCATCCAAATGGGCTGGAAGTCATCATCAATACAGAGATTTGGGACCTTCGGACTT
TCCATCTTTTACACACTGTTCCTGCTCTGGATCAATGCCGTGTTGTTTTTAACCACACTGGGACAGTGAT
GTATGGAGCAATGTTGCAGGCAGATGATGAAGATGACTTACTGGAAGAGAGGATGAAAAGCCCTTTTGGG
TCATCCTTTCGAACATTCAACGCAACTGATTATAAACCTATAGCAACTATTGATGTGAAACGAAACATCT
TTGACCTGTGCACAGACACCAAAGACTGTTATCTTGCTGTCATTGAGAATCAAGGCAGCATGGATGCACT
GAATATGGACACAGTGTGCAGGCTCTATGAAGTGGGCAGGCAGCGTCTGGCAGAGGATGAGGATGAAGAG
GAGGACCAGGAAGAGGAAGAACAGGAGGAAGAAGATGATGATGAAGATGATGATGATACTGATGATTTAG
ATGAACTAGACACTGACCAGTTGCTGGAGGCAGAACTGGAGGAGGATGACAACAATGAGAATGCAGGAGA
GGATGGAGACAATGACTTCTCTCCCTCTGATGAGGAGCTAGCAAACCTTCTAGAGGAGGGAGAGGAGGGG
GAAGATGAAGACTCTGATGCAGATGAGGAGGTGGAGCTGATCCTGGGGGACACAGACAGCTCGGACAACT
CTGATTTGGAAGATGACATCATCTTATCTCTGAATGAGTGA

Translation (1506 aa):
MTTVVVHVDSKAELTTLLEQWEKDHGSGQDMVPILTRMSELIEKETEEYRKGDPDPFDDRHPGRADPECM
LGHLLRILFKNDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREAD
QPLRTYSTGLLGGAMENQDIAANYRDENSQLVAIVLRRLRELQLQEVALRQDSKRPSPRKLSSEPLLPLD
EEAVDMDYGDMAVDVVDGEQESSRDMEISFRLDSSHKTSSRVNSATKPEEGGLKKNKSAKHGDRENFRKA
KQKLGFSSSDPDRVFVELSNSSWSEMSPWVIGTNYTLYPMTPAIEQRLILQYLTPLGEYQELLPIFMQLG
SRELMMFYIDLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYLS
YNQDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYDGLRRLVNLIS
TLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKAC
SYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILT
VVPKIQLQLAESVDVLDEAGSAVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGK
FISGTPRRKLSQTPKSSEHTLAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTV
RQIISKLPLFSSCQIQQLMKEPVLQDKRSDHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQS
RISFPEKELLLLIRNHLISKGLGETATVLTREADLPMTAASHSSAFTPVTAAASPVSLPRTPRIANGIAS
RLGSHATVGASAPSAPPAHPPPRPPQGSLPLPGPSYAGNSPLIGRISFIRERPSPCNGRKIRVLRQKSDH
GAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFT
SRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYN
VFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDR
VIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMN
ISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLLEERMKSPFG
SSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEE
EDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEEDDNNENAGEDGDNDFSPSDEELANLLEEGEEG
EDEDSDADEEVELILGDTDSSDNSDLEDDIILSLNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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