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Report for CCDS90959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90959.1 Public Homo sapiens 1 GLIS1 24 110 108 CCDS HistoryNCBI Gene:148979Re-query CCDS DB by CCDS ID:90959.1Re-query CCDS DB by GeneID:148979See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90959.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000628545.2 ENSP00000486112.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000628545.2Link to Ensembl Protein Viewer:ENSP00000486112.1Re-query CCDS DB by Nucleotide ID:ENST00000628545Re-query CCDS DB by Protein ID:ENSP00000486112
Original member Current member NCBI NM_001367484.1 NP_001354413.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001367484.1Link to Protein Sequence:NP_001354413.1Re-query CCDS DB by Nucleotide ID:NM_001367484Re-query CCDS DB by Protein ID:NP_001354413Link to BLAST:NP_001354413.1
Original member Current member NCBI NM_001390837.1 NP_001377766.1 Accepted alive Link to Nucleotide Sequence:NM_001390837.1Link to Protein Sequence:NP_001377766.1Re-query CCDS DB by Nucleotide ID:NM_001390837Re-query CCDS DB by Protein ID:NP_001377766Link to BLAST:NP_001377766.1

Chromosomal Locations for CCDS 90959.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53506619 53506776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53509120 53509287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53509849 53510027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53514625 53514781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53520634 53520766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53524777 53524887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53529791 53529952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53594108 53594990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53600101 53600278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53737806 53738064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGCATTGCGAGGTGGCTGAGGCACACTCGGACAAGAGGCCTAAGGAGGCCCCTGGTGCGCCCGGCCCCG
ACCGCGGCCCCGCCAGCCTCGGCGCGCACATGGCCTTCAGGGTCACCGTGAGTGGCGGCGGCTGCGGGGA
CAGGGGCCCGCGGGACCTGCTAGCCCGGCCGCCTGCGCCGCCACCGCGCGCCCACGACCTCCTCCGGCCC
CGCAGTCCCCGAGACTACGGTCCATCCAAGGCCGCCGCCGCCGGGAAGGTGAATGGGAGCTACGGACACC
GTACCCCGGGCTCAGAGAAGAGCCTGCTGGACCTGGACCTTGCTGAGGGCCCTGGCCCCACCTGCTGCCA
GGGCCTGTTTCTCCCTGCAGGAAGCCCACCGCCCCGGGCTCACCCCCAAGCTTGTGAGAGGCTGCTGCAT
TTCCCCCACCCTGACAGGTCACCTAGACCCCAGGCCACGTATGTGAACGGCAGCCTCCCAACCACACAAC
ACATCAAACAGGAGTCCTTGCCCGACTACCAAGCCATGGCAGAGGCCCGCACATCCCTGTCTGCCCACTG
TCGGGGCCCGCTGGCCACTGGCCTGCACCCAGACCTGGACCTCCCGGGCCGAAGCCTCGCCACCCCTGCG
CCTTCCTGCTACCTTCTGGGCAGCGAACCCAGCTCTGGCCTGGGCCTCCAGCCCGAGACCCACCTCCCCG
AGGGCAGCCTGAAGCGGTGCTGCGTCTTGGGCCTACCCCCCACCTCCCCAGCCTCCTCCTCACCCTGTGC
CTCCTCCGACGTCACCTCCATCATCCGCTCCTCCCAGACGTCTCTGGTCACCTGTGTAAATGGACTCCGG
AGCCCCCCTCTGACGGGAGATCTGGGGGGCCCTTCCAAGCGGGCCCGGCCTGGCCCTGCATCGACGGACA
GCCATGAGGGCAGCTTGCAACTTGAAGCCTGCCGGAAGGCGAGCTTCCTGAAGCAGGAACCCGCGGATGA
GTTTTCAGAGCTCTTTGGGCCTCACCAGCAGGGCCTGCCGCCCCCCTATCCCCTGTCTCAGTTGCCGCCT
GGCCCAAGCCTTGGAGGCCTGGGGCTGGGCCTGGCAGGCAGGGTGGTGGCCGGGCGGCAGGCGTGCCGCT
GGGTGGACTGCTGTGCAGCCTATGAGCAGCAGGAGGAGCTGGTGCGGCACATCGAGAAGAGCCACATCGA
CCAGCGCAAGGGCGAGGACTTCACCTGCTTCTGGGCTGGCTGCGTGCGCCGCTACAAGCCCTTCAACGCC
CGCTACAAGCTGCTCATCCACATGCGAGTGCACTCGGGCGAGAAGCCCAACAAGTGCATGTTTGAAGGCT
GCAGCAAGGCCTTCTCACGGCTGGAGAACCTCAAGATCCACCTGAGGAGCCACACGGGCGAGAAGCCGTA
CCTGTGCCAGCACCCGGGTTGCCAGAAGGCCTTCAGCAACTCCAGCGACCGCGCCAAGCACCAGCGCACC
CACCTAGACACGAAGCCGTACGCCTGTCAGATCCCTGGCTGCTCCAAGCGCTACACAGACCCCAGCTCCC
TCCGCAAGCACGTCAAGGCCCATTCAGCCAAAGAGCAGCAGGTGCGTAAGAAGCTGCATGCGGGCCCTGA
CACCGAGGCCGACGTCCTGACCGAGTGTCTGGTCCTGCAGCAGCTCCACACGTCCACACAGCTGGCTGCC
AGCGACGGCAAGGGTGGCTGTGGCCTGGGCCAGGAGCTGCTCCCAGGTGTGTATCCTGGCTCCATCACCC
CCCATAACGGACTTGCATCGGGCCTCCTGCCCCCAGCGCACGACGTACCTTCCAGGCACCACCCGCTGGA
TGCCACCACCAGTTCCCACCACCATCTGTCCCCTCTGCCCATGGCTGAGAGCACCCGGGATGGGTTGGGG
CCCGGCCTCCTCTCACCAATAGTCAGCCCCCTGAAGGGGCTGGGGCCACCGCCGCTGCCCCCATCCTCTC
AGAGCCATTCTCCGGGGGGCCAGCCCTTCCCCACACTCCCCAGCAAGCCGTCCTACCCACCCTTCCAGAG
CCCTCCACCCCCGCCTCTGCCCAGCCCACAAGGTTACCAGGGCAGTTTCCACTCCATCCAGAGTTGCTTC
CCCTATGGCGACTGCTACCGGATGGCTGAACCAGCAGCCGGTGGGGACGGACTGGTCGGGGAGACCCACG
GTTTCAACCCCCTGCGGCCCAATGGCTACCACAGCCTCAGCACGCCCTTGCCTGCCACAGGCTATGAGGC
CCTGGCTGAGGCCTCATGCCCCACAGCGCTGCCACAGCAGCCATCTGAAGATGTGGTGTCCAGCGGCCCC
GAGGACTGTGGCTTCTTCCCCAATGGAGCCTTTGACCACTGCCTGGGCCACATCCCCTCCATCTACACAG
ACACCTGA

Translation (795 aa):
MHCEVAEAHSDKRPKEAPGAPGPDRGPASLGAHMAFRVTVSGGGCGDRGPRDLLARPPAPPPRAHDLLRP
RSPRDYGPSKAAAAGKVNGSYGHRTPGSEKSLLDLDLAEGPGPTCCQGLFLPAGSPPPRAHPQACERLLH
FPHPDRSPRPQATYVNGSLPTTQHIKQESLPDYQAMAEARTSLSAHCRGPLATGLHPDLDLPGRSLATPA
PSCYLLGSEPSSGLGLQPETHLPEGSLKRCCVLGLPPTSPASSSPCASSDVTSIIRSSQTSLVTCVNGLR
SPPLTGDLGGPSKRARPGPASTDSHEGSLQLEACRKASFLKQEPADEFSELFGPHQQGLPPPYPLSQLPP
GPSLGGLGLGLAGRVVAGRQACRWVDCCAAYEQQEELVRHIEKSHIDQRKGEDFTCFWAGCVRRYKPFNA
RYKLLIHMRVHSGEKPNKCMFEGCSKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRT
HLDTKPYACQIPGCSKRYTDPSSLRKHVKAHSAKEQQVRKKLHAGPDTEADVLTECLVLQQLHTSTQLAA
SDGKGGCGLGQELLPGVYPGSITPHNGLASGLLPPAHDVPSRHHPLDATTSSHHHLSPLPMAESTRDGLG
PGLLSPIVSPLKGLGPPPLPPSSQSHSPGGQPFPTLPSKPSYPPFQSPPPPPLPSPQGYQGSFHSIQSCF
PYGDCYRMAEPAAGGDGLVGETHGFNPLRPNGYHSLSTPLPATGYEALAEASCPTALPQQPSEDVVSSGP
EDCGFFPNGAFDHCLGHIPSIYTDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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