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Report for CCDS91463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91463.1 Public Homo sapiens 11 PRDM11 24 110 108 CCDS HistoryNCBI Gene:56981Re-query CCDS DB by CCDS ID:91463.1Re-query CCDS DB by GeneID:56981See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91463.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534751.3 ENSP00000456942.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534751.3Link to Ensembl Protein Viewer:ENSP00000456942.2Re-query CCDS DB by Nucleotide ID:ENST00000534751Re-query CCDS DB by Protein ID:ENSP00000456942
Original member Current member NCBI NM_001384649.1 NP_001371578.1 Accepted alive Link to Nucleotide Sequence:NM_001384649.1Link to Protein Sequence:NP_001371578.1Re-query CCDS DB by Nucleotide ID:NM_001384649Re-query CCDS DB by Protein ID:NP_001371578Link to BLAST:NP_001371578.1
Original member Current member NCBI NM_001384650.1 NP_001371579.1 Accepted alive Link to Nucleotide Sequence:NM_001384650.1Link to Protein Sequence:NP_001371579.1Re-query CCDS DB by Nucleotide ID:NM_001384650Re-query CCDS DB by Protein ID:NP_001371579Link to BLAST:NP_001371579.1
Original member Current member NCBI NM_001384651.1 NP_001371580.1 Accepted alive Link to Nucleotide Sequence:NM_001384651.1Link to Protein Sequence:NP_001371580.1Re-query CCDS DB by Nucleotide ID:NM_001384651Re-query CCDS DB by Protein ID:NP_001371580Link to BLAST:NP_001371580.1

Chromosomal Locations for CCDS 91463.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45181767 45181885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45182246 45182349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45182861 45183123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45204711 45204778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45208874 45209295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45212469 45213043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGACCGAGAACATGAAGGAGTGCTTGGCCCAGACCAATGCAGCCGTGGGGGATATGGTGACGGTGGTGA
AGACGGAGGTCTGCTCACCACTCCGAGACCAGGAGTATGGCCAGCCCTGCTCTAGGAGACCGGACTCCTC
GGCCATGGAAGTTGAGCCCAAGAAACTGAAGGGGAAGCGCGACCTCATCGTGCCCAAAAGCTTCCAGCAA
GTGGACTTCTGGTTCTGTGAGTCCTGCCAGGAGTACTTCGTGGATGAATGCCCAAACCATGGCCCCCCGG
TGTTTGTGTCTGACACACCGGTGCCCGTGGGCATCCCAGACCGGGCGGCGCTCACCATCCCACAGGGCAT
GGAGGTGGTCAAGGACACTAGTGGAGAGAGTGACGTGCGATGTGTAAACGAGGTCATCCCCAAGGGCCAC
ATCTTCGGCCCCTATGAGGGGCAGATCTCCACCCAGGACAAATCAGCTGGCTTCTTCTCCTGGCTGATTG
TGGACAAGAACAACCGCTATAAGTCCATAGATGGCTCAGACGAGACCAAAGCCAACTGGATGAGGAATGT
GGCACACCTGGCTGAGCGTAAGAGGAAGCCCAAGTTCTCCAAGGAGGAGCTGGACATTCTTGTCACAGAG
GTGACCCACCATGAAGCAGTGCTCTTTGGGAGGGAGACCATGCGGCTGTCCCATGCTGACAGGGACAAGA
TTTGGGAAGGCATAGCCCGGAAAATCACCTCCGTCAGCCAGGTGCCCCGCTCCGTCAAGGACATTAAGCA
CAGATGGGATGACATGAAACGGAGGACCAAGGACAAGCTGGCCTTCATGCAGCAGTCCCTGTCGGGCCCT
GGGGCCGGGGGCCGGGCCCCCACCATCGTGCTCACGGCCCACGAGAGGGCCATCAAGTCGGCGCTGCTCA
CGGCCCGTGCAGGGCGCGGCTTCCCCAGGGCGGAACTGGATGGCACCGACAGCCCTTCGACCAGCTATGA
TGAAGATGAGGAGGCGCCTGGGCCCTCAAGGCAGCCTCTTCGGGTGCCTCTGCAGCGGTCTCCGGAGGAA
GAGGCCCACCTGGCCAGGCCCGCCCTGCTCCGTTCATCCTCCTCCTCAGACCAGTCTGAGACGGTGGGCC
CCAAGCCAGAGGCCCTGCCCCATCCCTCGCCCCAGGCCCAGGCTGCCTGCAGGACCCCTCGGCCGCACCC
CAGCCCACCCACCACGGGCCTTGACTGGCAGCTCCTCCACGTCCATGCCCAGCAGACCGAGGTGTTCCGG
CAGTTCTGCCAGGAGCTGGTGACCGTGCACCGGGACATGGCCAACAGCATGCACGTCATCGGCCAGGCCA
TGGCCGAGCTGACCAGCCGTGTCGGTCAGATGTGCCAGACGCTGACAGAGATCCGGGATGGGGTTCAGGC
ATCTCAGCGGGGGCCAGAAGGGGCAGACCCTACGGGCTCCACTCCCCAGGCCACCCAGGCCCAAGCCCCC
CTGCCAGAGCCCCCACCAGCTTCCCCAGCATCAGCCCCCACACGGACTACCAGGTCTCGGAAGAGAAAGC
ACAATTTCTAA

Translation (516 aa):
MTENMKECLAQTNAAVGDMVTVVKTEVCSPLRDQEYGQPCSRRPDSSAMEVEPKKLKGKRDLIVPKSFQQ
VDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGH
IFGPYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRNVAHLAERKRKPKFSKEELDILVTE
VTHHEAVLFGRETMRLSHADRDKIWEGIARKITSVSQVPRSVKDIKHRWDDMKRRTKDKLAFMQQSLSGP
GAGGRAPTIVLTAHERAIKSALLTARAGRGFPRAELDGTDSPSTSYDEDEEAPGPSRQPLRVPLQRSPEE
EAHLARPALLRSSSSSDQSETVGPKPEALPHPSPQAQAACRTPRPHPSPPTTGLDWQLLHVHAQQTEVFR
QFCQELVTVHRDMANSMHVIGQAMAELTSRVGQMCQTLTEIRDGVQASQRGPEGADPTGSTPQATQAQAP
LPEPPPASPASAPTRTTRSRKRKHNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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