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Report for CCDS91612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91612.1 Public Homo sapiens 11 THY1 24 110 108 CCDS HistoryNCBI Gene:7070Re-query CCDS DB by CCDS ID:91612.1Re-query CCDS DB by GeneID:7070See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91612.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000580275.5 ENSP00000464248.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580275.5Link to Ensembl Protein Viewer:ENSP00000464248.1Re-query CCDS DB by Nucleotide ID:ENST00000580275Re-query CCDS DB by Protein ID:ENSP00000464248
Original member Current member NCBI NM_001372050.1 NP_001358979.1 Accepted alive Link to Nucleotide Sequence:NM_001372050.1Link to Protein Sequence:NP_001358979.1Re-query CCDS DB by Nucleotide ID:NM_001372050Re-query CCDS DB by Protein ID:NP_001358979Link to BLAST:NP_001358979.1

Chromosomal Locations for CCDS 91612.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119419408 119419520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119420051 119420335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119420869 119420905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGAACCTGGCCATCAGCATCGCTCTCCTGCTAACAGTGGACCAGAGCCTTCGTCTGGACTGCCGCCATG
AG
AATACCAGCAGTTCACCCATCCAGTACGAGTTCAGCCTGACCCGTGAGACAAAGAAGCACGTGCTCTT
T
GGCACTGTGGGGGTGCCTGAGCACACATACCGCTCCCGAACCAACTTCACCAGCAAATACAACATGAAG
GTC
CTCTACTTATCCGCCTTCACTAGCAAGGACGAGGGCACCTACACGTGTGCACTCCACCACTCTGGCC
AT
TCCCCACCCATCTCCTCCCAGAACGTCACAGTGCTCAGAGACAAACTGGTCAAGTGTGAGGGCATCAG
C
CTGCTGGCTCAGAACACCTCGTGGCTGCTGCTGCTCCTGCTCTCCCTCTCCCTCCTCCAGGCCACGGAT
TTC
ATGTCCCTGTGA


Translation (144 aa):
MNLAISIALLLTVDQSLRLDCRHENTSSSPIQYEFSLTRETKKHVLFGTVGVPEHTYRSRTNFTSKYNMK
V
LYLSAFTSKDEGTYTCALHHSGHSPPISSQNVTVLR
DKLVKCEGISLLAQNTSWLLLLLLSLSLLQATD
F
MSL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser