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Report for CCDS91743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91743.1 Public Homo sapiens 12 PARPBP 24 110 108 CCDS HistoryNCBI Gene:55010Re-query CCDS DB by CCDS ID:91743.1Re-query CCDS DB by GeneID:55010See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543784.5 ENSP00000444576.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543784.5Link to Ensembl Protein Viewer:ENSP00000444576.1Re-query CCDS DB by Nucleotide ID:ENST00000543784Re-query CCDS DB by Protein ID:ENSP00000444576
Original member Current member NCBI NM_001382735.1 NP_001369664.1 Accepted alive Link to Nucleotide Sequence:NM_001382735.1Link to Protein Sequence:NP_001369664.1Re-query CCDS DB by Nucleotide ID:NM_001382735Re-query CCDS DB by Protein ID:NP_001369664Link to BLAST:NP_001369664.1

Chromosomal Locations for CCDS 91743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102123889 102124041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102164438 102164608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102165729 102165883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102195951 102196023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCTGTGTTTAATCAGAAGTCTGTCTCGGATATGATTAAAGAGTTTCGAAAAAATTGGCGTGCTCTTT
GTAACTCTGAGAGAACTACTCTATGTGGTGCAGACTCCATGCTCTTGGCATTGCAGCTTTCTATGGCGGA
GAACAACAAACAGGTGCAGCTGCTAGCAAGGAAAATTATCTTTTCATATTTAAATCTGCTAGTGAATTCA
AAGAATGACCTGGCTGTGGCTTATATTCTCAATATTCCTGATAGAGGACTAGGAAGAGAAGCCTTCACTG
ATTTGAAACATGCTGCTCGAGAGAAACAAATGTCTATCTTTTTGGTGGCCACGTCTTTTATTAGAACAAT
AGAGCTTGGAGGGAAAGGATATGCACCACCACCATCAGATCCTTTAAGGACACATGTAAAGGGATTGTCT
AATTTTATTAATTTCATTGACAAATTAGATGAGATTCTTGGAGAAATACCAAACCCAAGAGGGTGTAAAT
CCATCTGTTGGAAGATCAACAATTGGAACGAGTTTTGGAAATGTTCATCTGGACAGAAGTAA

Translation (183 aa):
MAVFNQKSVSDMIKEFRKNWRALCNSERTTLCGADSMLLALQLSMAENNKQVQLLARKIIFSYLNLLVNS
KNDLAVAYILNIPDRGLGREAFTDLKHAAREKQMSIFLVATSFIRTIELGGKGYAPPPSDPLRTHVKGLS
NFINFIDKLDEILGEIPNPRGCKSICWKINNWNEFWKCSSGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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