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Report for CCDS92297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92297.1 Public Homo sapiens 17 MSL1 24 110 108 CCDS HistoryNCBI Gene:339287Re-query CCDS DB by CCDS ID:92297.1Re-query CCDS DB by GeneID:339287See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398532.9 ENSP00000381543.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398532.9Link to Ensembl Protein Viewer:ENSP00000381543.3Re-query CCDS DB by Nucleotide ID:ENST00000398532Re-query CCDS DB by Protein ID:ENSP00000381543
Original member Current member NCBI NM_001365919.1 NP_001352848.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365919.1Link to Protein Sequence:NP_001352848.1Re-query CCDS DB by Nucleotide ID:NM_001365919Re-query CCDS DB by Protein ID:NP_001352848Link to BLAST:NP_001352848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352848.1 614 Q68DK7-1 614 100% 0 0

Chromosomal Locations for CCDS 92297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40122613 40123380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40126183 40126406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40129245 40129627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40131537 40131584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40132034 40132098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40133042 40133109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40133534 40133658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40133827 40133899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40134279 40134369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGACCATGAGATCCGCGGTGTTCAAGGCGGCCGCGGCCCCTGCCGGCGGCAATCCTGAGCAGCGACTGG
ACTACGAGCGGGCTGCGGCGCTGGGCGGGCCCGAGGACGAGCCTGGGGCGGCCGAAGCCCACTTCCTCCC
CCGGCACCGTAAGCTCAAGGAGCCGGGGCCCCCGCTGGCCTCCTCCCAGGGCGGGAGCCCCGCGCCTTCC
CCGGCCGGCTGCGGCGGCAAGGGCCGGGGCTTGTTACTCCCGGCCGGGGCGGCCCCCGGGCAGCAGGAAG
AGAGCTGGGGCGGTTCGGTGCCCTTGCCCTGTCCGCCCCCGGCCACCAAGCAAGCCGGCATTGGGGGGGA
GCCTGCCGCAGCCGGAGCCGGCTGCAGCCCCCGGCCCAAGTATCAGGCGGTGCTGCCCATTCAGACGGGC
TCTCTCGTGGCGGCGGCCAAAGAGCCTACGCCCTGGGCTGGGGACAAGGGTGGGGCGGCCTCCCCCGCTG
CCACCGCCTCGGACCCGGCGGGACCCCCACCACTACCTCTGCCCGGGCCGCCACCCCTCGCGCCCACCGC
CACCGCCGGGACCCTGGCGGCCAGCGAGGGCAGATGGAAGAGTATGAGGAAGAGCCCTCTCGGGGGTGGT
GGCGGCTCGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATCCTTCTGCTGCAATTGGACCTCATCG
AACAGCAGCAGCAGCAGCTGCAGGCCAAGGAAAAGGAGATCGAGGAGCTGAAGTCAGAGAGAGACACGCT
CCTTGCTCGGATTGAACGTATGGAAAGGCGGATGCAGCTGGTAAAGAAGGATAACGAGAAAGAAAGGCAC
AAGCTGTTTCAGGGCTATGAAACTGAAGAGAGAGAGGAAACAGAGCTATCTGAGAAAATTAAACTGGAGT
GCCAGCCGGAGCTTTCCGAGACATCCCAGACTCTGCCTCCCAAGCCCTTCTCATGTGGGCGGAGTGGAAA
GGGACATAAAAGGAAATCCCCATTTGGAAGTACAGAAAGAAAGACTCCTGTTAAAAAGCTGGCTCCTGAA
TTTTCAAAAGTCAAAACAAAAACTCCTAAGCACTCTCCTATTAAAGAGGAACCCTGTGGTTCCTTATCTG
AAACTGTTTGTAAACGTGAATTGAGGAGCCAAGAAACCCCAGAAAAGCCCCGGTCTTCAGTGGACACCCC
ACCAAGACTCTCCACTCCCCAAAAGGGACCCAGCACCCATCCCAAGGAGAAAGCCTTCTCAAGTGAGATA
GAAGATTTGCCGTACCTTTCCACCACAGAAATGTATTTGTGTCGTTGGCACCAGCCTCCCCCATCACCGT
TACCATTACGGGAATCCTCTCCAAAGAAGGAGGAGACTGTAGCAAGGTGTCTGATGCCATCAAGTGTTGC
AGGAGAAACTTCAGTCTTGGCTGTTCCTTCTTGGAGGGACCACTCAGTAGAGCCTCTAAGGGACCCAAAT
CCTTCAGACCTTTTGGAGAACCTGGATGACAGTGTGTTTTCGAAGCGGCATGCAAAACTGGAGCTGGATG
AGAAGAGAAGGAAAAGATGGGATATTCAGAGGATCAGGGAACAAAGAATTTTACAGCGACTGCAGCTCAG
AATGTATAAAAAGAAAGGAATTCAGGAATCTGAGCCTGAGGTTACCTCATTTTTCCCTGAGCCAGATGAT
GTTGAAAGTTTGATGATTACCCCCTTCTTGCCTGTTGTAGCATTTGGACGACCATTACCAAAATTAACTC
CACAGAATTTTGAGCTACCCTGGTTGGATGAGCGTAGCCGATGCAGATTGGAGATCCAGAAGAAGCAAAC
ACCTCACCGGACGTGTAGGAAATAG

Translation (614 aa):
MTMRSAVFKAAAAPAGGNPEQRLDYERAAALGGPEDEPGAAEAHFLPRHRKLKEPGPPLASSQGGSPAPS
PAGCGGKGRGLLLPAGAAPGQQEESWGGSVPLPCPPPATKQAGIGGEPAAAGAGCSPRPKYQAVLPIQTG
SLVAAAKEPTPWAGDKGGAASPAATASDPAGPPPLPLPGPPPLAPTATAGTLAASEGRWKSMRKSPLGGG
GGSGASSQAACLKQILLLQLDLIEQQQQQLQAKEKEIEELKSERDTLLARIERMERRMQLVKKDNEKERH
KLFQGYETEEREETELSEKIKLECQPELSETSQTLPPKPFSCGRSGKGHKRKSPFGSTERKTPVKKLAPE
FSKVKTKTPKHSPIKEEPCGSLSETVCKRELRSQETPEKPRSSVDTPPRLSTPQKGPSTHPKEKAFSSEI
EDLPYLSTTEMYLCRWHQPPPSPLPLRESSPKKEETVARCLMPSSVAGETSVLAVPSWRDHSVEPLRDPN
PSDLLENLDDSVFSKRHAKLELDEKRRKRWDIQRIREQRILQRLQLRMYKKKGIQESEPEVTSFFPEPDD
VESLMITPFLPVVAFGRPLPKLTPQNFELPWLDERSRCRLEIQKKQTPHRTCRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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