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Report for CCDS92456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92456.1 Public Homo sapiens 18 KATNAL2 24 110 108 CCDS HistoryNCBI Gene:83473Re-query CCDS DB by CCDS ID:92456.1Re-query CCDS DB by GeneID:83473See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356157.12 ENSP00000348478.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356157.12Link to Ensembl Protein Viewer:ENSP00000348478.6Re-query CCDS DB by Nucleotide ID:ENST00000356157Re-query CCDS DB by Protein ID:ENSP00000348478
Original member Current member EBI ENST00000683218.1 ENSP00000508137.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683218.1Link to Ensembl Protein Viewer:ENSP00000508137.1Re-query CCDS DB by Nucleotide ID:ENST00000683218Re-query CCDS DB by Protein ID:ENSP00000508137
Original member Current member NCBI NM_001367621.1 NP_001354550.1 Accepted alive Link to Nucleotide Sequence:NM_001367621.1Link to Protein Sequence:NP_001354550.1Re-query CCDS DB by Nucleotide ID:NM_001367621Re-query CCDS DB by Protein ID:NP_001354550Link to BLAST:NP_001354550.1
Original member Current member NCBI NM_001387690.1 NP_001374619.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001387690.1Link to Protein Sequence:NP_001374619.1Re-query CCDS DB by Nucleotide ID:NM_001387690Re-query CCDS DB by Protein ID:NP_001374619Link to BLAST:NP_001374619.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001354550.1 538 Q8IYT4-1 538 100% 0 0
NP_001374619.1 538 Q8IYT4-1 538 100% 0 0

Chromosomal Locations for CCDS 92456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46946873 46946923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47046457 47046527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47052880 47053046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47054396 47054438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47058235 47058352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47059556 47059654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47062972 47063070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47063284 47063361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47067021 47067119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47069220 47069283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47069482 47069600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47075277 47075368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47077351 47077461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47099243 47099405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47100254 47100356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47100866 47101005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGAGCTTTCCTACCAGACCCTGAAATTCACGCATCAGGCGCGGGAAGCGTGCGAGATGAGGACAGAAG
CACGACGAAAAAATCTTCTCATTTTGATTTCGCATTATTTAACACAAGAAGGGTATATCGATACAGCAAA
TGCTTTGGAGCAAGAAACTAAACTGGGGTTACGACGGTTTGAAGTTTGTGACAACATTGATCTTGAAACT
ATTTTGATGGAATATGAGAGTTATTATTTTGTAAAATTTCAGAAATACCCCAAAATTGTCAAAAAGTCAT
CAGACACAGCAGAAAATAATTTACCGCAAAGAAGTAGAGGGAAGACCAGAAGGATGATGAACGACAGTTG
TCAAAATCTTCCCAAGATCAATCAGCAGAGGCCCCGGTCCAAAACCACAGCGGGGAAGACAGGGGACACC
AAATCGCTCAATAAGGAGCATCCTAATCAGGAGGTAGTTGATAACACTCGCCTGGAAAGTGCCAACTTCG
GCCTACATATATCAAGAATCCGTAAAGACAGTGGAGAGGAAAATGCCCACCCACGAAGAGGCCAAATCAT
TGACTTCCAAGGGCTGCTCACAGATGCCATCAAGGGAGCAACCAGTGAACTTGCCTTGAACACCTTCGAC
CATAATCCAGACCCCTCAGAACGACTGCTGAAACCTCTGAGTGCATTTATTGGCATGAACAGTGAGATGC
GAGAATTGGCAGCCGTGGTGAGCCGGGACATTTATCTCCATAATCCAAACATAAAGTGGAATGACATTAT
TGGACTTGATGCAGCCAAGCAGTTAGTCAAAGAAGCTGTTGTGTATCCTATAAGGTATCCACAGCTATTT
ACAGGAATTCTTTCTCCCTGGAAAGGACTACTGCTGTACGGCCCTCCAGGTACAGGAAAGACTTTACTGG
CCAAAGCTGTGGCCACTGAATGTAAAACAACCTTCTTTAACATTTCTGCATCCACCATTGTCAGCAAATG
GAGAGGGGATTCAGAAAAACTCGTTCGGGTGTTATTTGAGCTTGCCCGCTACCACGCCCCATCCACGATC
TTCCTGGACGAGCTGGAGTCGGTGATGAGTCAGAGAGGCACAGCTTCTGGGGGAGAACATGAAGGAAGCC
TGCGGATGAAGACAGAGTTACTGGTGCAGATGGATGGGCTGGCACGCTCAGAAGATCTCGTATTTGTCTT
AGCAGCTTCTAACCTGCCGTGGGAGCTGGACTGTGCCATGTTACGCCGCCTGGAGAAGAGGATTCTGGTC
GATCTCCCCAGCCGGGAGGCCAGGCAGGCCATGATCTACCACTGGCTGCCTCCTGTGAGCAAGAGCAGGG
CCTTGGAGCTGCACACAGAGCTGGAGTACAGTGTGCTGAGCCAGGAGACTGAGGGCTACTCAGGCTCAGA
TATTAAGCTCGTCTGCAGGGAAGCAGCCATGCGGCCCGTGAGGAAGATCTTTGATGCACTTGAAAATCAC
CAGTCAGAAAGCAGCGACTTACCCAGGATCCAGTTGGATATAGTAACCACTGCCGACTTTCTGGATGTGC
TAACTCACACCAAGCCCTCCGCAAAGAATCTGGCTCAGAGATACTCAGACTGGCAAAGAGAGTTCGAGTC
TGTCTGA

Translation (538 aa):
MELSYQTLKFTHQAREACEMRTEARRKNLLILISHYLTQEGYIDTANALEQETKLGLRRFEVCDNIDLET
ILMEYESYYFVKFQKYPKIVKKSSDTAENNLPQRSRGKTRRMMNDSCQNLPKINQQRPRSKTTAGKTGDT
KSLNKEHPNQEVVDNTRLESANFGLHISRIRKDSGEENAHPRRGQIIDFQGLLTDAIKGATSELALNTFD
HNPDPSERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIRYPQLF
TGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTI
FLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLRRLEKRILV
DLPSREARQAMIYHWLPPVSKSRALELHTELEYSVLSQETEGYSGSDIKLVCREAAMRPVRKIFDALENH
QSESSDLPRIQLDIVTTADFLDVLTHTKPSAKNLAQRYSDWQREFESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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