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Report for CCDS92495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92495.1 Public Homo sapiens 19 TINCR 24 110 108 CCDS HistoryNCBI Gene:257000Re-query CCDS DB by CCDS ID:92495.1Re-query CCDS DB by GeneID:257000See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 92495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448587.5 ENSP00000490584.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448587.5Link to Ensembl Protein Viewer:ENSP00000490584.1Re-query CCDS DB by Nucleotide ID:ENST00000448587Re-query CCDS DB by Protein ID:ENSP00000490584
Original member Current member NCBI NM_001396408.1 NP_001383337.1 Accepted alive Link to Nucleotide Sequence:NM_001396408.1Link to Protein Sequence:NP_001383337.1Re-query CCDS DB by Nucleotide ID:NM_001396408Re-query CCDS DB by Protein ID:NP_001383337Link to BLAST:NP_001383337.1

Chromosomal Locations for CCDS 92495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5562208 5562211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5567665 5567924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGGAGGGGCTGCGGCGGGGGCTGTCGCGCTGGAAGCGCTACCACATCAAGGTGCACCTGGCGGACGAGG
CGCTGCTGCTACCGCTGACCGTGCGGCCGCGGGACACGCTCAGCGACCTGCGCGCCCAGCTGGTGGGCCA
GGGCGTGAGCTCCTGGAAGCGCGCCTTCTACTACAACGCGCGGCGGCTGGACGACCACCAGACGGTGCGC
GACGCGCGCCTGCAGGACGGCTCGGTGCTGCTGCTCGTCAGCGACCCCAGGTAG

Translation (87 aa):
MEGLRRGLSRWKRYHIKVHLADEALLLPLTVRPRDTLSDLRAQLVGQGVSSWKRAFYYNARRLDDHQTVR
DARLQDGSVLLLVSDPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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