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Report for CCDS92740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92740.1 Public Homo sapiens 2 CDKL4 24 110 108 CCDS HistoryNCBI Gene:344387Re-query CCDS DB by CCDS ID:92740.1Re-query CCDS DB by GeneID:344387See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451199.7 ENSP00000389833.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451199.7Link to Ensembl Protein Viewer:ENSP00000389833.2Re-query CCDS DB by Nucleotide ID:ENST00000451199Re-query CCDS DB by Protein ID:ENSP00000389833
Original member Current member EBI ENST00000699627.1 ENSP00000514486.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699627.1Link to Ensembl Protein Viewer:ENSP00000514486.1Re-query CCDS DB by Nucleotide ID:ENST00000699627Re-query CCDS DB by Protein ID:ENSP00000514486
Original member Current member NCBI NM_001397900.1 NP_001384829.1 Accepted alive Link to Nucleotide Sequence:NM_001397900.1Link to Protein Sequence:NP_001384829.1Re-query CCDS DB by Nucleotide ID:NM_001397900Re-query CCDS DB by Protein ID:NP_001384829Link to BLAST:NP_001384829.1

Chromosomal Locations for CCDS 92740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 39175995 39176096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39179187 39179321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39184591 39184647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39187627 39187709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39190305 39190502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39204527 39204617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39213400 39213472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39225839 39225960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39229365 39229532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGTATTCAAATGCAGAAACA
AAACCTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTGTTGTTAAGAAAAT
AGCACTAAGAGAAATACGTATGTTGAAGCAATTAAAACATCCAAATCTTGTGAACCTCATCGAGGTGTTC
AGGAGAAAAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAGCTGGAAAGAA
ACCCAAATGGAGTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAATTTCTG
TCATATACATAACTGTATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAATC
AAGATTTGTGACTTCGGGTTTGCACAAATTCTGATTCCAGGAGATGCCTACACCGATTATGTAGCTACGA
GATGGTACCGAGCTCCTGAACTTCTTGTGGGAGATACTCAGTATGGTTCTTCAGTCGATATATGGGCTAT
TGGTTGTGTTTTTGCAGAGCTCCTGACAGGCCAGCCACTGTGGCCTGGAAAATCAGATGTGGACCAACTT
TATCTGATAATCAGAACACTAGGAAAATTAATCCCAAGACATCAATCAATCTTTAAAAGTAACGGGTTTT
TCCATGGCATCAGTATACCTGAGCCAGAAGACATGGAAACTCTTGAGGAAAAGTTCTCAGATGTTCATCC
TGTGGCTCTGAACTTCATGAAGGGGTGTCTGAAGATGAATCCAGATGACAGATTAACCTGTTCCCAACTC
CTGGAGAGCTCCTACTTTGATTCTTTTCAAGAGGCCCAAATTAAAAGAAAAGCACGTAATGAAGGAAGAA
ACAGAAGACGCCAACAGAATCAACTGTTGCCTCTCATACCAGGAAGCCACATCTCCCCCACACCTGATGG
AAGAAAACAAGTCCTCCAGTTAAAATTTGATCACCTTCCAAACATTTAG

Translation (342 aa):
MEKYEKLAKTGEGSYGVVFKCRNKTSGQVVAVKKFVESEDDPVVKKIALREIRMLKQLKHPNLVNLIEVF
RRKRKMHLVFEYCDHTLLNELERNPNGVADGVIKSVLWQTLQALNFCHIHNCIHRDIKPENILITKQGII
KICDFGFAQILIPGDAYTDYVATRWYRAPELLVGDTQYGSSVDIWAIGCVFAELLTGQPLWPGKSDVDQL
YLIIRTLGKLIPRHQSIFKSNGFFHGISIPEPEDMETLEEKFSDVHPVALNFMKGCLKMNPDDRLTCSQL
LESSYFDSFQEAQIKRKARNEGRNRRRQQNQLLPLIPGSHISPTPDGRKQVLQLKFDHLPNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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