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Report for CCDS93.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93.1 Public Homo sapiens 1 PARK7 24 110 108 CCDS HistoryNCBI Gene:11315Re-query CCDS DB by CCDS ID:93.1Re-query CCDS DB by GeneID:11315See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338639.10 ENSP00000340278.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338639.10Link to Ensembl Protein Viewer:ENSP00000340278.5Re-query CCDS DB by Nucleotide ID:ENST00000338639Re-query CCDS DB by Protein ID:ENSP00000340278
Original member Current member EBI ENST00000377488.5 ENSP00000366708.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377488.5Link to Ensembl Protein Viewer:ENSP00000366708.1Re-query CCDS DB by Nucleotide ID:ENST00000377488Re-query CCDS DB by Protein ID:ENSP00000366708
Original member Current member EBI ENST00000377491.5 ENSP00000366711.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377491.5Link to Ensembl Protein Viewer:ENSP00000366711.1Re-query CCDS DB by Nucleotide ID:ENST00000377491Re-query CCDS DB by Protein ID:ENSP00000366711
Original member Current member EBI ENST00000493678.5 ENSP00000418770.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493678.5Link to Ensembl Protein Viewer:ENSP00000418770.1Re-query CCDS DB by Nucleotide ID:ENST00000493678Re-query CCDS DB by Protein ID:ENSP00000418770
Original member Current member NCBI NM_001123377.2 NP_001116849.1 Accepted alive Link to Nucleotide Sequence:NM_001123377.2Link to Protein Sequence:NP_001116849.1Re-query CCDS DB by Nucleotide ID:NM_001123377Re-query CCDS DB by Protein ID:NP_001116849Link to BLAST:NP_001116849.1
Original member Current member NCBI NM_007262.5 NP_009193.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007262.5Link to Protein Sequence:NP_009193.2Re-query CCDS DB by Nucleotide ID:NM_007262Re-query CCDS DB by Protein ID:NP_009193Link to BLAST:NP_009193.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116849.1 189 Q99497 189 100% 0 0
NP_009193.2 189 Q99497 189 100% 0 0

Chromosomal Locations for CCDS 93.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 7962786 7962875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7965324 7965425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7969345 7969404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7970894 7970963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7977652 7977738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7984894 7985054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCTTCCAAAAGAGCTCTGGTCATCCTGGCTAAAGGAGCAGAGGAAATGGAGACGGTCATCCCTGTAG
ATGTCATGAGGCGAGCTGGGATTAAGGTCACCGTTGCAGGCCTGGCTGGAAAAGACCCAGTACAGTGTAG
CCGTGATGTGGTCATTTGTCCTGATGCCAGCCTTGAAGATGCAAAAAAAGAGGGACCATATGATGTGGTG
GTTCTACCAGGAGGTAATCTGGGCGCACAGAATTTATCTGAGTCTGCTGCTGTGAAGGAGATACTGAAGG
AGCAGGAAAACCGGAAGGGCCTGATAGCCGCCATCTGTGCAGGTCCTACTGCTCTGTTGGCTCATGAAAT
AGGTTTTGGAAGTAAAGTTACAACACACCCTCTTGCTAAAGACAAAATGATGAATGGAGGTCATTACACC
TACTCTGAGAATCGTGTGGAAAAAGACGGCCTGATTCTTACAAGCCGGGGGCCTGGGACCAGCTTCGAGT
TTGCGCTTGCAATTGTTGAAGCCCTGAATGGCAAGGAGGTGGCGGCTCAAGTGAAGGCTCCACTTGTTCT
TAAAGACTAG

Translation (189 aa):
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVV
VLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYT
YSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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