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Report for CCDS93055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93055.1 Public Homo sapiens 20 ARFGEF2 24 110 108 CCDS HistoryNCBI Gene:10564Re-query CCDS DB by CCDS ID:93055.1Re-query CCDS DB by GeneID:10564See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93055.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000679436.1 ENSP00000504888.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679436.1Link to Ensembl Protein Viewer:ENSP00000504888.1Re-query CCDS DB by Nucleotide ID:ENST00000679436Re-query CCDS DB by Protein ID:ENSP00000504888
Current member NCBI NM_001410846.1 NP_001397775.1 Accepted alive Link to Nucleotide Sequence:NM_001410846.1Link to Protein Sequence:NP_001397775.1Re-query CCDS DB by Nucleotide ID:NM_001410846Re-query CCDS DB by Protein ID:NP_001397775Link to BLAST:NP_001397775.1

Chromosomal Locations for CCDS 93055.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 48921890 48922010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48941199 48941229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48941864 48941987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48951323 48951469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48952705 48952884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48953556 48953790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48963830 48963898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48965875 48966023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48969147 48969277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48971120 48971354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48972326 48972425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48973145 48973284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48974766 48974874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48976016 48976199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48984729 48984840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48985408 48985613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48988304 48988388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48988491 48988662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48989285 48989436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48989556 48989684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48991040 48991198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48994451 48994598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48995783 48995882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48998193 48998233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48998336 48998505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49005070 49005221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49010232 49010404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49011924 49012084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49013564 49013694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49013831 49013960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49016280 49016415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49017249 49017387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49017496 49017550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49018884 49018998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49023051 49023181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49025313 49025481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49028530 49028668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49032049 49032166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49033023 49033199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5355 nt):
ATGCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAGG
TGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGATGAAATTAAAGCAGAAAT
AGAAAAGCAGAGGCTTGGCACTGCTGCACCACCAAAGGCAAACTTCATTGAAGCTGACAAGTATTTTCTT
CCATTCGAGCTAGCTTGCCAGTCCAAGTCCCCAAGGGTAGTCAGCACATCCCTTGACTGCTTGCAGAAAC
TCATCGCATACGGGCACATCACTGGCAACGCCCCTGACAGTGGAGCCCCTGGGAAGCGGCTGATCGACAG
AATTGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCAGACTGATGAAGGGGTTCAGTTACAAATAATT
AAGGCTCTTCTGACTGCAGTGACTTCCCCACACATTGAAATTCATGAGGGTACTATCCTGCAGACAGTGA
GAACATGTTACAATATCTATTTGGCCAGCAAAAATCTCATCAATCAAACCACTGCCAAGGCTACCCTTAC
TCAGATGCTGAACGTCATTTTCACCCGCATGGAAAACCAAGTGTTGCAGGAGGCCAGAGAACTGGAAAAA
CCAATCCAGTCAAAACCCCAGTCCCCTGTGATCCAAGCTGCAGCAGTATCCCCAAAGTTCGTTCGTTTGA
AGCACAGTCAGGCACAAAGCAAACCAACAACTCCCGAAAAAACAGATTTAACCAACGGTGAACATGCCAG
GAGTGATTCTGGAAAAGTAAGCACAGAAAATGGAGACGCACCCAGAGAAAGAGGCTCATCACTGTCAGGG
ACTGATGACGGAGCCCAGGAGGTGGTGAAGGACATCTTGGAAGATGTAGTCACATCTGCCATTAAAGCAG
CGGAAAAGCATGGTCTGACAGAACCTGAGAGAGTTCTAGGTGAACTGGAGTGCCAGGAATGTGCTATTCC
CCCAGGAGTTGATGAAAACTCACAGACCAACGGGATAGCCGATGACAGGCAGTCCTTGTCGTCAGCAGAT
AATCTGGAATCGGATGCACAAGGACATCAAGTGGCTGCCAGGTTCTCCCACGTTCTGCAGAAGGATGCCT
TCCTTGTGTTCCGCTCCCTGTGCAAGCTGTCCATGAAACCCCTTGGTGAAGGCCCTCCAGACCCAAAATC
CCATGAGCTGCGTTCCAAGGTGGTTTCCCTGCAGCTGCTCCTCTCTGTGTTGCAAAATGCTGGCCCCGTA
TTCAGGACTCACGAGATGTTCATCAATGCAATCAAGCAATATCTCTGTGTGGCCTTGTCCAAAAACGGCG
TCTCTTCAGTGCCTGATGTCTTTGAGCTCTCTCTTGCCATTTTTCTTACTCTTCTTTCAAACTTTAAAAT
GCACTTGAAAATGCAGATAGAGGTCTTTTTCAAAGAGATTTTCCTGAACATTTTAGAAACATCAACAAGT
TCTTTTGAGCACAGGTGGATGGTCATTCAGACTCTGACGAGGATCTGTGCAGATGCCCAGTGTGTTGTGG
ATATTTATGTCAACTACGACTGTGATTTAAATGCTGCTAACATTTTTGAGCGCCTTGTAAATGATTTATC
CAAAATTGCTCAGGGAAGAAGTGGACATGAGCTGGGAATGACACCTCTGCAGGAGCTCAGCCTGAGGAAG
AAAGGCCTGGAGTGCCTCGTGTCCATTCTCAAGTGCATGGTGGAGTGGAGCAAAGACCTGTATGTGAATC
CCAACCACCAGACCAGCCTCGGTCAGGAGAGGCTCACGGATCAGGAAATAGGGGATGGGAAAGGCCTTGA
CATGGCAAGACGGTGTAGTGTGACGTCCATGGAGTCCACAGTGTCCTCGGGGACCCAGACAACTGTTCAG
GATGACCCTGAGCAATTTGAGGTCATCAAGCAACAAAAAGAAATCATTGAACACGGCATCGAGCTGTTCA
ACAAGAAACCCAAGAGGGGGATCCAGTTTCTCCAGGAGCAGGGCATGCTGGGAACGTCAGTTGAAGACAT
AGCCCAATTCCTGCACCAGGAGGAGCGCCTGGATTCCACCCAAGTAGGCGATTTTCTGGGAGATAGCGCA
AGGTTCAACAAGGAGGTGATGTATGCCTACGTGGACCAACTTGACTTCTGTGAAAAAGAATTTGTCTCAG
CCCTGCGGACATTCCTAGAAGGTTTCCGCCTACCTGGAGAAGCCCAAAAGATTGACCGATTAATGGAGAA
GTTTGCCGCAAGATACATAGAATGCAACCAAGGGCAAACTCTGTTTGCTAGTGCTGACACTGCTTATGTC
CTAGCGTATTCAATTATTATGCTGACTACAGACTTGCACAGTCCTCAGGTAAAAAATAAAATGACGAAAG
AGCAGTATATTAAAATGAATCGGGGTATCAATGATAGTAAAGATCTGCCAGAAGAGTATCTCTCAAGCAT
CTATGAAGAGATAGAAGGCAAGAAAATTGCAATGAAAGAAACAAAAGAGCTAACGATTGCAACCAAATCT
ACTAAGCAGAATGTAGCTAGTGAAAAGCAGCGGCGGCTGCTGTACAACTTAGAGATGGAGCAAATGGCTA
AAACAGCCAAAGCTCTGATGGAGGCTGTGAGCCATGCCAAAGCCCCGTTTACCAGTGCCACTCACCTGGA
CCATGTCCGGCCAATGTTCAAACTGGTGTGGACGCCACTATTGGCAGCCTACAGCATCGGACTCCAGAAC
TGTGATGACACTGAAGTGGCCTCCTTGTGTTTGGAAGGCATCCGATGTGCAATCCGAATCGCCTGCATCT
TTGGAATGCAGCTGGAACGAGATGCCTATGTTCAGGCTCTTGCTCGCTTCTCCCTACTCACAGCCAGCTC
CAGCATCACAGAAATGAAGCAGAAAAACATCGACACCATTAAGACGCTTATCACAGTGGCTCACACCGAT
GGCAACTACCTTGGGAATTCCTGGCATGAGATCTTGAAATGCATCAGCCAGCTGGAGCTCGCTCAGCTGA
TAGGAACCGGTGTGAAGACGCGCTACCTGTCTGGATCTGGGCGTGAAAGAGAAGGGAGCCTGAAGGGCCA
CACATTGGCAGGAGAAGAGTTCATGGGCCTTGGCCTCGGTAATTTGGTGAGTGGCGGAGTGGATAAAAGA
CAGATGGCCAGCTTCCAAGAATCGGTTGGTGAGACCAGCTCGCAGAGTGTGGTTGTAGCTGTGGACAGGA
TTTTTACTGGGTCTACCAGACTGGATGGAAATGCAATAGTTGACTTTGTCCGCTGGCTGTGTGCTGTGTC
CATGGATGAACTGGCTTCCCCCCACCATCCTCGCATGTTCAGCTTGCAGAAGATTGTGGAGATATCATAC
TACAACATGAATCGGATCCGACTACAGTGGTCTCGAATATGGCATGTGATTGGAGATCACTTCAATAAGG
TTGGCTGCAACCCTAATGAAGATGTGGCTATCTTTGCTGTTGACTCATTAAGGCAACTCTCCATGAAGTT
TCTTGAGAAGGGTGAATTAGCCAACTTCCGTTTCCAGAAAGATTTTCTGAGGCCCTTTGAGCATATTATG
AAGAAAAACAGGTCTCCCACCATCCGGGACATGGCGATCCGCTGCATTGCCCAGATGGTGAACTCCCAGG
CGGCCAACATCCGCTCAGGTTGGAAGAACATCTTTGCCGTGTTCCACCAGGCAGCCTCTGATCATGATGG
GAACATTGTGGAGCTGGCCTTCCAGACCACTTGCCACATTGTCACAACTATTTTCCAGCACCATTTTCCT
GCAGCCATCGATTCCTTTCAGGATGCTGTGAAGTGCTTATCAGAGTTCGCCTGCAACGCCGCTTTCCCTG
ACACGAGCATGGAAGCGATTCGGCTCATCCGCTTCTGTGGCAAATACGTCTCTGAGAGGCCTCGGGTGCT
ACAAGAATACACAAGTGATGACATGAATGTAGCTCCTGGTGACAGAGTCTGGGTCCGAGGCTGGTTCCCC
ATCTTATTCGAACTCTCCTGCATCATTAATAGATGCAAGTTAGATGTACGAACAAGGGGACTCACAGTCA
TGTTTGAGATCATGAAGAGCTATGGCCACACCTTTGAAAAGCACTGGTGGCAGGACCTGTTCAGAATCGT
GTTTCGGATTTTTGACAATATGAAACTCCCTGAGCAACTGTCAGAGAAATCTGAGTGGATGACAACAACC
TGCAATCACGCACTTTATGCTATTTGTGATGTTTTTACCCAGTTTTATGAAGCTTTGAATGAAGTTCTTC
TTTCTGATGTATTTGCACAATTGCAGTGGTGTGTCAAACAAGATAATGAACAGTTGGCGCGATCAGGTAC
AAATTGCTTAGAAAACTTAGTAATATCCAATGGAGAGAAATTCAGTCCTGAAGTCTGGGATGAAACCTGC
AACTGTATGTTGGATATTTTCAAAACAACCATCCCACATGTTTTGCTGACATGGAGACCTGTAGGAATGG
AGGAAGATTCATCAGAAAAGCATTTGGATGTGGATCTGGACCGCCAGTCTTTAAGCAGCATAGATAAAAA
TCCCTCTGAGAGGGGACAGAGCCAGCTCTCTAACCCAACAGATGACAGCTGGAAGGGTAGACCATACGCA
AATCAGAAACTGTTTGCCAGCCTCCTCATCAAGTGTGTGGTCCAGTTGGAATTGATACAGACCATTGACA
ACATTGTGTTCTACCCTGCGACGAGCAAAAAGGAGGATGCAGAGCACATGGTTGCCGCCCAGCAAGACAC
GCTGGATGCAGATATCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATGTCTTCCCAGCACCTC
TTCAAGCTGTTGGACTGTTTGCAGGAATCCCATTCATTCTCAAAGGCCTTCAACTCCAATTACGAGCAGC
GGACTGTCCTGTGGCGAGCAGGTTTTAAGGGCAAGTCTAAACCCAATCTTCTAAAACAAGAAACCAGCAG
CCTGGCCTGTTGTTTGAGGATCCTGTTTCGAATGTATGTTGATGAGAACCGCAGGGATTCCTGGGAAGAA
ATACAGCAGAGACTTTTAACTGTTTGCAGTGAAGCTCTTGCCTATTTCATCACTGTGAATTCTGAGAGCC
ATCGGGAGGCCTGGACAAGTCTCTTGTTGTTACTTCTAACTAAAACCCTCAAAATAAATGATGAAAAGTT
CAAAGCACATGCTTCAATGTACTACCCCTACTTGTGTGAAATTATGCAGTTTGACCTGATCCCTGAGCTC
CGAGCAGTTCTGCGGAAGTTCTTCCTACGGATAGGTGTTGTGTATAAGATATGGATACCAGAAGAGCCAT
CACAGGTACCAGCAGCACTGTCACCAGTGTGGTAG

Translation (1784 aa):
MQESQTKSMFVSRALEKILADKEVKRPQHSQLRRACQVALDEIKAEIEKQRLGTAAPPKANFIEADKYFL
PFELACQSKSPRVVSTSLDCLQKLIAYGHITGNAPDSGAPGKRLIDRIVETICSCFQGPQTDEGVQLQII
KALLTAVTSPHIEIHEGTILQTVRTCYNIYLASKNLINQTTAKATLTQMLNVIFTRMENQVLQEARELEK
PIQSKPQSPVIQAAAVSPKFVRLKHSQAQSKPTTPEKTDLTNGEHARSDSGKVSTENGDAPRERGSSLSG
TDDGAQEVVKDILEDVVTSAIKAAEKHGLTEPERVLGELECQECAIPPGVDENSQTNGIADDRQSLSSAD
NLESDAQGHQVAARFSHVLQKDAFLVFRSLCKLSMKPLGEGPPDPKSHELRSKVVSLQLLLSVLQNAGPV
FRTHEMFINAIKQYLCVALSKNGVSSVPDVFELSLAIFLTLLSNFKMHLKMQIEVFFKEIFLNILETSTS
SFEHRWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRSGHELGMTPLQELSLRK
KGLECLVSILKCMVEWSKDLYVNPNHQTSLGQERLTDQEIGDGKGLDMARRCSVTSMESTVSSGTQTTVQ
DDPEQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGDSA
RFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQTLFASADTAYV
LAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYEEIEGKKIAMKETKELTIATKS
TKQNVASEKQRRLLYNLEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQN
CDDTEVASLCLEGIRCAIRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTD
GNYLGNSWHEILKCISQLELAQLIGTGVKTRYLSGSGREREGSLKGHTLAGEEFMGLGLGNLVSGGVDKR
QMASFQESVGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISY
YNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIM
KKNRSPTIRDMAIRCIAQMVNSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTCHIVTTIFQHHFP
AAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFP
ILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFEKHWWQDLFRIVFRIFDNMKLPEQLSEKSEWMTTT
CNHALYAICDVFTQFYEALNEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPEVWDETC
NCMLDIFKTTIPHVLLTWRPVGMEEDSSEKHLDVDLDRQSLSSIDKNPSERGQSQLSNPTDDSWKGRPYA
NQKLFASLLIKCVVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDADIHIETEDQGMYKYMSSQHL
FKLLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWEE
IQQRLLTVCSEALAYFITVNSESHREAWTSLLLLLLTKTLKINDEKFKAHASMYYPYLCEIMQFDLIPEL
RAVLRKFFLRIGVVYKIWIPEEPSQVPAALSPVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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