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Report for CCDS93056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93056.1 Public Homo sapiens 20 RIPOR3 24 110 108 CCDS HistoryNCBI Gene:140876Re-query CCDS DB by CCDS ID:93056.1Re-query CCDS DB by GeneID:140876See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327979.8 ENSP00000332663.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327979.8Link to Ensembl Protein Viewer:ENSP00000332663.3Re-query CCDS DB by Nucleotide ID:ENST00000327979Re-query CCDS DB by Protein ID:ENSP00000332663
Original member Current member NCBI NM_001290268.2 NP_001277197.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001290268.2Link to Protein Sequence:NP_001277197.1Re-query CCDS DB by Nucleotide ID:NM_001290268Re-query CCDS DB by Protein ID:NP_001277197Link to BLAST:NP_001277197.1

Chromosomal Locations for CCDS 93056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 50587232 50587332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50587802 50587892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50589686 50589769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50592344 50592546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50593035 50593196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50594553 50594714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50595369 50595504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50596140 50596263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50597580 50597710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50602072 50602644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50604645 50604774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50608389 50608534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50608613 50608738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50608912 50608955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50609293 50609356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50609573 50609722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50610853 50610906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50611181 50611204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50616002 50616080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50619986 50620132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50630738 50630856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50691126 50691128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGGTGACCACCATGTCGGTGAGGTTGCGGTTCCTGTCCCCTGGGGACACAGGGGCCGTGGGGGTCGTGG
GCCGGAGCGCCTCCTTCGCAGGCTTCAGCAGTGCACAGAGCCGGAGGATCGCAAAGTCCATCAACAGGAA
CTCCGTGAGATCGCGAATGCCTGCAAAATCCTCCAAGATGTACGGCACGCTGCGGAAGGGGTCGGTCTGT
GCAGACCCGAAGCCCCAGCAGGTGAAGAAGATCTTCGAAGCATTGAAAAGAGGCCTCAAGGAGTATCTGT
GTGTGCAGCAGGCTGAGCTGGACCACCTGTCTGGACGCCACAAAGACACCAGGAGGAATTCCAGGCTGGC
TTTCTATTATGACCTGGACAAGCAAACGCGCTGTGTGGAAAGGCACATTCGGAAGATGGAGTTTCACATC
AGCAAGGTGGATGAGCTGTACGAGGACTACTGCATCCAGTGCCGCCTGCGCGACGGCGCCTCCAGCATGC
AGCGGGCCTTCGCCCGGTGCCCCCCGAGCCGCGCAGCCCGAGAGAGCCTGCAGGAGCTGGGCCGCAGCCT
GCACGAGTGCGCCGAGGACATGTGGCTCATCGAGGGGGCCCTGGAGGTTCACCTGGGCGAGTTCCACATC
AGGATGAAAGGCTTGGTGGGCTACGCACGCCTCTGTCCCGGAGACCACTATGAGGTGCTCATGCGTCTGG
GCCGCCAGCGTTGGAAGCTCAAGGGTCGGATCGAGTCAGATGACAGCCAGACCTGGGACGAAGAGGAGAA
GGCCTTCATCCCCACGCTGCATGAGAACCTGGACATCAAGGTGACGGAGTTGCGGGGCCTGGGCTCGCTG
GCTGTGGGTGCAGTGACGTGTGACATCGCCGACTTCTTCACGACGCGGCCGCAGGTCATCGTGGTGGACA
TCACGGAGTTGGGTACCATCAAGCTGCAGCTGGAGGTGCAGTGGAACCCGTTTGATACTGAGAGCTTCCT
GGTGTCACCCAGCCCCACGGGCAAGTTTTCTATGGGCAGCAGGAAGGGCTCCTTGTACAACTGGACACCC
CCGAGCACCCCCAGCTTCCGGGAGAGATACTACCTGTCTGTCCTACAGCAGCCAACACAGCAGGCCTTGC
TGCTGGGTGGCCCAAGGGCCACCTCCATCCTCAGCTACCTGTCTGACAGCGACCTCCGGGGTCCCAGCCT
AAGAAGCCAGAGTCAGGAGCTGCCTGAGATGGACTCCTTCAGCTCTGAGGACCCCCGAGACACGGAGACC
AGCACGTCGGCGTCCACCTCAGATGTGGGCTTCCTGCCCTTGACCTTCGGTCCCCACGCCTCCATTGAAG
AGGAGGCTCGGGAGGACCCCCTGCCCCCAGGTCTCCTGCCAGAGATGGCCCACCTCTCTGGAGGCCCGTT
TGCAGAGCAGCCTGGCTGGAGGAACTTAGGAGGGGAGAGCCCCAGCCTGCCACAGGGCTCCCTGTTCCAC
AGCGGCACAGCCTCGAGTAGCCAGAACGGCCACGAGGAAGGGGCAACCGGGGACAGAGAGGACGGGCCTG
GCGTGGCCCTCGAGGGGCCTCTGCAGGAGGTCCTGGAGTTGCTGAGGCCCACGGACTCCACCCAGCCCCA
GCTCCGGGAGCTGGAGTACCAGGTCCTCGGCTTCCGGGACCGGCTGAAGCCCTGCAGAGCACGGCAGGAG
CACACCTCGGCCGAGAGCCTGATGGAGTGCATCCTGGAGAGCTTCGCCTTCCTCAATGCCGACTTCGCCC
TGGATGAGCTGTCCCTGTTTGGGGGCTCCCAGGGTCTCCGAAAGGACCGGCCCCTGCCCCCACCGTCATC
ACTGAAAGCGTCATCCAGGGAACTCACAGCCGGTGCCCCAGAGCTGGACGTGCTGCTGATGGTACACCTC
CAAGTCTGCAAAGCTCTGCTGCAGAAACTGGCCTCCCCTAATTTATCAAGGCTGGTCCAGGAATGCCTCC
TGGAAGAAGTGGCACAGCAAAAGCACGTTCTGGAGACACTTTCTGTCCTTGACTTTGAGAAGGTCGGCAA
GGCAACATCCATTGAAGAGATCATCCCACAGGCCTCGCGGACGAAGGGGTGCCTGAAGCTGTGGAGAGGG
TGCACAGGGCCTGGCAGGGTCCTGTCCTGCCCTGCCACGACGCTGCTGAACCAGCTCAAGAAAACCTTCC
AGCACAGAGTCAGAGGGAAGTACCCAGGACAGCTGGAAATAGCGTGCCGCAGGCTCCTGGAGCAGGTGGT
CAGCTGTGGTGGGCTGCTCCCCGGAGCTGGGCTCCCAGAAGAACAGATCATTACCTGGTTCCAGTTTCAC
AGCTACCTGCAGAGGCAGAGCGTCTCTGACCTGGAGAAGCACTTCACCCAGCTCACCAAGGAAGTGACAC
TCATCGAGGAGCTTCACTGTGCGGGACAGGCCAAGGTGGTCCGGAAGCTGCAGGGGAAGCGGCTGGGCCA
GCTCCAGCCTCTGCCCCAGACCTTAAGAGCCTGGGCGCTGCTCCAGCTGGACGGCACTCCGAGGGTGTGC
AGGGCGGCCAGCGCTCGCCTGGCTGGTGCAGTCAGGAACAGAAGCTTCCGGGAAAAGGCTTTGCTGTTCT
ACACCAACGCCCTGGCAGAGAACGACGCAAGGCTCCAGCAGGCCGCATGCCTAGCGCTCAAACACCTCAA
GGGCATTGAAAGCATCGACCAGACTGCCAGCCTGTGCCAGTCTGACCTGGAGGCCGTGCGGGCGGCAGCC
CGGGAAACCACACTGTCGTTCGGTGAAAAAGGACGGTTAGCTTTTGAGAAGATGGACAAGCTCTGCTCAG
AACAAAGAGAAGTCTTTTGCCAGGAGGCAGATGTTGAAATCACAATATTTTAA

Translation (950 aa):
MVTTMSVRLRFLSPGDTGAVGVVGRSASFAGFSSAQSRRIAKSINRNSVRSRMPAKSSKMYGTLRKGSVC
ADPKPQQVKKIFEALKRGLKEYLCVQQAELDHLSGRHKDTRRNSRLAFYYDLDKQTRCVERHIRKMEFHI
SKVDELYEDYCIQCRLRDGASSMQRAFARCPPSRAARESLQELGRSLHECAEDMWLIEGALEVHLGEFHI
RMKGLVGYARLCPGDHYEVLMRLGRQRWKLKGRIESDDSQTWDEEEKAFIPTLHENLDIKVTELRGLGSL
AVGAVTCDIADFFTTRPQVIVVDITELGTIKLQLEVQWNPFDTESFLVSPSPTGKFSMGSRKGSLYNWTP
PSTPSFRERYYLSVLQQPTQQALLLGGPRATSILSYLSDSDLRGPSLRSQSQELPEMDSFSSEDPRDTET
STSASTSDVGFLPLTFGPHASIEEEAREDPLPPGLLPEMAHLSGGPFAEQPGWRNLGGESPSLPQGSLFH
SGTASSSQNGHEEGATGDREDGPGVALEGPLQEVLELLRPTDSTQPQLRELEYQVLGFRDRLKPCRARQE
HTSAESLMECILESFAFLNADFALDELSLFGGSQGLRKDRPLPPPSSLKASSRELTAGAPELDVLLMVHL
QVCKALLQKLASPNLSRLVQECLLEEVAQQKHVLETLSVLDFEKVGKATSIEEIIPQASRTKGCLKLWRG
CTGPGRVLSCPATTLLNQLKKTFQHRVRGKYPGQLEIACRRLLEQVVSCGGLLPGAGLPEEQIITWFQFH
SYLQRQSVSDLEKHFTQLTKEVTLIEELHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVC
RAASARLAGAVRNRSFREKALLFYTNALAENDARLQQAACLALKHLKGIESIDQTASLCQSDLEAVRAAA
RETTLSFGEKGRLAFEKMDKLCSEQREVFCQEADVEITIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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