NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9308.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9308.2 Public Homo sapiens 13 RNF17 24 110 108 CCDS HistoryNCBI Gene:56163Re-query CCDS DB by CCDS ID:9308.2Re-query CCDS DB by GeneID:56163See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9308.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255324.10 ENSP00000255324.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255324.10Link to Ensembl Protein Viewer:ENSP00000255324.5Re-query CCDS DB by Nucleotide ID:ENST00000255324Re-query CCDS DB by Protein ID:ENSP00000255324
Original member Current member NCBI NM_031277.3 NP_112567.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031277.3Link to Protein Sequence:NP_112567.2Re-query CCDS DB by Nucleotide ID:NM_031277Re-query CCDS DB by Protein ID:NP_112567Link to BLAST:NP_112567.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112567.2 1623 Q9BXT8-3 1623 100% 0 0

Chromosomal Locations for CCDS 9308.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24764204 24764333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24767272 24767366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24774813 24774904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24778295 24778406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24779667 24779747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24781844 24781944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24787988 24788159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24789348 24789424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24789698 24789772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24793042 24793346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24796137 24796295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24799395 24799584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24800366 24800534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24802381 24802571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24804288 24804429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24825619 24825772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24830484 24830599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24831858 24831978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24842041 24842161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24843744 24843971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24844652 24844802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24844961 24845079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24850341 24850443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24851456 24851571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24853855 24854144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24859001 24859164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24861268 24861387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24862713 24862793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24864873 24864998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24866144 24866203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24868600 24868716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24870571 24870739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24874114 24874249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24876997 24877186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24879187 24879285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4872 nt):
ATGGCGGCAGAGGCTTCGAAGACTGGGCCTTCTAGGTCTTCCTACCAGCGAATGGGGAGGAAGAGTCAGC
CCTGGGGTGCCGCTGAAATCCAGTGCACCAGGTGTGGAAGGAGGGTATCCAGATCATCCGGTCACCATTG
TGAACTTCAATGTGGACATGCTTTTTGTGAACTATGCTTGTTAATGACTGAAGAATGCACCACAATTATA
TGCCCTGATTGTGAGGTTGCTACAGCTGTAAATACTAGACAACGCTACTACCCAATGGCTGGATATATTA
AGGAAGACTCCATAATGGAAAAACTGCAGCCTAAGACGATAAAGAATTGTTCTCAGGACTTTAAGAAGAC
TGCTGATCAGCTAACTACTGGTTTAGAACGTTCAGCCTCCACAGACAAGACTCTTTTGAACTCATCAGCT
GTAATGTTGGACACTAATACTGCAGAAGAAATTGATGAAGCATTGAATACAGCACACCATAGTTTCGAAC
AGTTAAGCATTGCTGGAAAAGCACTTGAACACATGCAGAAGCAAACGATAGAGGAAAGAGAAAGAGTTAT
AGAAGTTGTGGAGAAACAGTTTGACCAACTTTTGGCTTTTTTTGATTCCAGGAAAAAGAACCTGTGTGAA
GAATTTGCAAGAACTACTGATGATTATCTATCAAATTTAATAAAGGCTAAAAGCTACATTGAAGAGAAAA
AAAATAATTTGAATGCAGCTATGAACATAGCAAGAGCATTACAATTATCGCCTTCTCTAAGAACATACTG
TGACCTGAATCAGATTATCCGGACTTTGCAGTTAACTTCAGATAGTGAATTAGCACAAGTTAGTTCTCCA
CAACTAAGGAACCCTCCCAGGTTGAGTGTGAATTGCAGTGAGATCATCTGTATGTTCAACAATATGGGAA
AGATTGAATTTAGGGACTCAACAAAATGTTATCCCCAAGAAAATGAAATTAGACAGAATGTTCAAAAGAA
ATATAATAACAAAAAGGAACTTTCTTGTTACGATACATACCCACCGCTAGAAAAGAAAAAGGTTGACATG
TCTGTCCTAACCAGTGAAGCACCACCACCTCCTTTGCAACCTGAGACAAATGATGTACATTTAGAAGCAA
AAAACTTCCAGCCACAGAAAGACGTTGCAACAGCATCCCCTAAAACCATTGCTGTGTTACCTCAGATGGG
ATCTAGCCCTGATGTGATAATTGAAGAAATTATTGAAGACAACGTGGAAAGTTCTGCAGAGCTAGTTTTT
GTAAGCCATGTAATAGATCCTTGCCATTTCTACATTCGGAAGTATTCACAAATAAAAGACGCCAAAGTAC
TGGAGAAGAAGGTGAATGAATTTTGCAATAGGAGTTCACACCTTGATCCTTCAGACATTTTGGAACTAGG
TGCAAGAATATTTGTCAGCAGTATTAAAAATGGAATGTGGTGTCGAGGAACTATCACAGAATTAATTCCA
ATAGAGGGTAGAAATACCAGAAAACCTTGTAGTCCAACCAGATTATTTGTCCATGAAGTTGCACTAATAC
AAATATTCATGGTAGATTTTGGAAATTCTGAAGTCCTGATTGTCACTGGAGTTGTTGATACCCATGTGAG
ACCAGAACACTCTGCTAAGCAACATATTGCACTAAATGATTTATGTCTGGTTCTAAGGAAATCTGAACCA
TATACTGAAGGGCTGCTAAAAGACATCCAGCCATTAGCACAACCATGCTCATTGAAAGACATTGTTCCAC
AGAATTCAAATGAAGGCTGGGAAGAGGAAGCTAAAGTGGAATTTTTGAAAATGGTAAATAACAAGGCTGT
TTCAATGAAAGTTTTTAGAGAAGAAGATGGTGTGCTTATTGTAGATCTGCAAAAACCACCACCGAATAAA
ATAAGCAGTGATATGCCTGTGTCTCTTAGAGATGCGCTAGTTTTTATGGAACTAGCAAAGTTTAAGTCAC
AATCACTAAGAAGTCACTTTGAAAAAAATACTACTTTACACTATCATCCACCTATTTTGCCTAAAGAAAT
GACAGATGTTTCAGTAACGGTTTGTCATATAAATAGTCCTGGAGATTTCTATCTTCAGTTGATAGAGGGC
CTGGATATTTTATTTCTATTAAAGACAATCGAGGAATTCTATAAAAGTGAAGATGGAGAAAATCTGGAAA
TCCTCTGTCCAGTTCAAGATCAAGCCTGTGTAGCTAAATTTGAAGATGGAATTTGGTACCGAGCAAAAGT
TATCGGATTGCCTGGACATCAGGAAGTTGAAGTTAAATATGTGGACTTTGGTAATACTGCAAAAATAACA
ATCAAAGACGTGCGTAAAATAAAGGATGAGTTTCTGAATGCCCCAGAGAAGGCAATTAAATGTAAGTTGG
CCTATATTGAACCATATAAAAGGACAATGCAGTGGTCCAAAGAAGCTAAAGAAAAATTTGAAGAAAAGGC
TCAAGATAAATTTATGACATGTTCAGTTATCAAAATTCTGGAAGATAATGTGCTCTTAGTTGAGCTTTTC
GATTCTCTTGGTGCTCCTGAAATGACTACTACTAGTATTAATGACCAGCTAGTTAAAGAGGGCCTAGCAT
CTTATGAAATAGGATACATCCTCAAAGATAATTCTCAAAAGCATATTGAAGTTTGGGATCCTTCTCCAGA
AGAAATTATTTCAAATGAAGTACACAACTTAAATCCTGTGTCTGCAAAATCTCTACCTAATGAGAATTTT
CAGTCACTTTATAATAAGGAATTGCCTGTGCATATCTGTAATGTAATATCTCCTGAGAAGATTTATGTTC
AGTGGTTGTTAACTGAAAACTTACTTAATAGTTTAGAAGAAAAGATGATAGCTGCTTATGAAAACTCAAA
ATGGGAACCTGTTAAATGGGAAAATGATATGCACTGTGCTGTTAAGATCCAAGATAAAAATCAGTGGCGA
AGAGGCCAGATCATCAGAATGGTTACAGACACATTGGTAGAGGTCTTGCTGTATGATGTGGGTGTTGAAC
TAGTAGTGAATGTTGACTGTTTAAGAAAACTTGAAGAAAATCTAAAGACAATGGGAAGACTCTCTTTGGA
ATGTTCTCTGGTTGACATAAGACCAGCTGGTGGGAGTGACAAGTGGACAGCAACAGCTTGTGACTGTCTT
TCATTGTACCTGACTGGAGCTGTAGCAACTATAATCTTACAGGTGGATAGTGAGGAAAACAACACAACAT
GGCCATTACCTGTGAAAATTTTCTGCAGAGATGAAAAAGGAGAGCGTGTTGATGTTTCTAAATATTTGAT
TAAAAAGGGTTTGGCTTTGAGAGAAAGGAGAATTAATAACTTAGATAACAGCCATTCATTATCTGAGAAG
TCTCTGGAAGTCCCCCTGGAACAGGAAGATTCAGTAGTTACTAACTGTATTAAAACTAACTTTGACCCTG
ACAAGAAAACTGCTGACATAATCAGTGAACAGAAAGTGTCTGAATTTCAGGAGAAAATTCTAGAACCAAG
AACCACTAGAGGGTATAAGCCACCAGCTATTCCTAACATGAACGTATTTGAGGCAACAGTCAGCTGTGTT
GGTGATGATGGAACTATATTTGTAGTACCTAAACTATCAGAATTTGAGCTAATAAAAATGACAAATGAAA
TTCAAAGTAATTTAAAATGCCTTGGTCTTTTGGAGCCTTATTTCTGGAAAAAAGGAGAAGCATGTGCAGT
AAGAGGATCCGATACTCTGTGGTATCGTGGCAAGGTGATGGAGGTTGTAGGTGGCGCTGTCAGAGTACAA
TATTTAGATCATGGATTCACTGAAAAGATTCCGCAGTGCCATCTTTACCCTATTTTGCTGTATCCTGATA
TACCCCAGTTTTGTATTCCTTGTCAGCTCCATAATACCACACCTGTTGGGAATGTCTGGCAACCAGATGC
AATAGAAGTTCTTCAACAACTGCTTTCAAAGAGACAGGTGGACATTCACATTATGGAGTTACCTAAAAAT
CCATGGGAGAAATTGTCTATTCACCTCTATTTTGATGGAATGTCACTTTCTTATTTTATGGCATACTATA
AATACTGTACTTCTGAACATACTGAGGAGATGTTGAAAGAAAAACCAAGATCAGATCATGATAAAAAGTA
TGAAGAGGAACAATGGGAAATAAGGTTTGAGGAATTGCTTTCGGCTGAAACAGACACTCCTCTTTTACCA
CCATATTTGTCTTCATCTCTGCCTTCCCCAGGAGAACTCTATGCTGTTCAAGTTAAGCACGTTGTCTCAC
CTAATGAAGTGTATATTTGCCTTGATTCTATAGAAACTTCTAACCAGTCTAACCAGCATAGTGACACAGA
TGATAGTGGAGTCAGCGGGGAATCAGAATCCGAGAGCCTTGATGAAGCACTGCAGAGGGTTAATAAGAAG
GTAGAGGCGCTTCCTCCTCTGACGGATTTTAGAACAGAAATGCCTTGCCTTGCAGAATATGATGATGGCT
TATGGTATAGAGCGAAGATTGTTGCCATTAAAGAATTTAATCCTTTATCTATCTTAGTACAATTTGTTGA
TTATGGATCAACTGCAAAGCTGACATTAAACAGACTGTGCCAAATTCCTTCTCATCTTATGCGGTATCCA
GCTCGAGCCATAAAGGTTCTCTTGGCAGGGTTTAAACCTCCCTTAAGGGATCTAGGGGAGACAAGAATAC
CATATTGTCCCAAATGGAGCATGGAGGCACTGTGGGCTATGATAGACTGTCTTCAAGGAAAACAACTCTA
TGCTGTGTCCATGGCTCCAGCACCAGAACAGATAGTGACATTATATGACGATGAACAGCATCCAGTTCAT
ATGCCGTTGGTAGAAATGGGGCTTGCAGATAAAGATGAATAA

Translation (1623 aa):
MAAEASKTGPSRSSYQRMGRKSQPWGAAEIQCTRCGRRVSRSSGHHCELQCGHAFCELCLLMTEECTTII
CPDCEVATAVNTRQRYYPMAGYIKEDSIMEKLQPKTIKNCSQDFKKTADQLTTGLERSASTDKTLLNSSA
VMLDTNTAEEIDEALNTAHHSFEQLSIAGKALEHMQKQTIEERERVIEVVEKQFDQLLAFFDSRKKNLCE
EFARTTDDYLSNLIKAKSYIEEKKNNLNAAMNIARALQLSPSLRTYCDLNQIIRTLQLTSDSELAQVSSP
QLRNPPRLSVNCSEIICMFNNMGKIEFRDSTKCYPQENEIRQNVQKKYNNKKELSCYDTYPPLEKKKVDM
SVLTSEAPPPPLQPETNDVHLEAKNFQPQKDVATASPKTIAVLPQMGSSPDVIIEEIIEDNVESSAELVF
VSHVIDPCHFYIRKYSQIKDAKVLEKKVNEFCNRSSHLDPSDILELGARIFVSSIKNGMWCRGTITELIP
IEGRNTRKPCSPTRLFVHEVALIQIFMVDFGNSEVLIVTGVVDTHVRPEHSAKQHIALNDLCLVLRKSEP
YTEGLLKDIQPLAQPCSLKDIVPQNSNEGWEEEAKVEFLKMVNNKAVSMKVFREEDGVLIVDLQKPPPNK
ISSDMPVSLRDALVFMELAKFKSQSLRSHFEKNTTLHYHPPILPKEMTDVSVTVCHINSPGDFYLQLIEG
LDILFLLKTIEEFYKSEDGENLEILCPVQDQACVAKFEDGIWYRAKVIGLPGHQEVEVKYVDFGNTAKIT
IKDVRKIKDEFLNAPEKAIKCKLAYIEPYKRTMQWSKEAKEKFEEKAQDKFMTCSVIKILEDNVLLVELF
DSLGAPEMTTTSINDQLVKEGLASYEIGYILKDNSQKHIEVWDPSPEEIISNEVHNLNPVSAKSLPNENF
QSLYNKELPVHICNVISPEKIYVQWLLTENLLNSLEEKMIAAYENSKWEPVKWENDMHCAVKIQDKNQWR
RGQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKLEENLKTMGRLSLECSLVDIRPAGGSDKWTATACDCL
SLYLTGAVATIILQVDSEENNTTWPLPVKIFCRDEKGERVDVSKYLIKKGLALRERRINNLDNSHSLSEK
SLEVPLEQEDSVVTNCIKTNFDPDKKTADIISEQKVSEFQEKILEPRTTRGYKPPAIPNMNVFEATVSCV
GDDGTIFVVPKLSEFELIKMTNEIQSNLKCLGLLEPYFWKKGEACAVRGSDTLWYRGKVMEVVGGAVRVQ
YLDHGFTEKIPQCHLYPILLYPDIPQFCIPCQLHNTTPVGNVWQPDAIEVLQQLLSKRQVDIHIMELPKN
PWEKLSIHLYFDGMSLSYFMAYYKYCTSEHTEEMLKEKPRSDHDKKYEEEQWEIRFEELLSAETDTPLLP
PYLSSSLPSPGELYAVQVKHVVSPNEVYICLDSIETSNQSNQHSDTDDSGVSGESESESLDEALQRVNKK
VEALPPLTDFRTEMPCLAEYDDGLWYRAKIVAIKEFNPLSILVQFVDYGSTAKLTLNRLCQIPSHLMRYP
ARAIKVLLAGFKPPLRDLGETRIPYCPKWSMEALWAMIDCLQGKQLYAVSMAPAPEQIVTLYDDEQHPVH
MPLVEMGLADKDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH