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Report for CCDS93145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93145.1 Public Homo sapiens 22 SEC14L3 24 110 108 CCDS HistoryNCBI Gene:266629Re-query CCDS DB by CCDS ID:93145.1Re-query CCDS DB by GeneID:266629See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403066.5 ENSP00000385941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403066.5Link to Ensembl Protein Viewer:ENSP00000385941.1Re-query CCDS DB by Nucleotide ID:ENST00000403066Re-query CCDS DB by Protein ID:ENSP00000385941
Original member Current member NCBI NM_001376914.1 NP_001363843.1 Accepted alive Link to Nucleotide Sequence:NM_001376914.1Link to Protein Sequence:NP_001363843.1Re-query CCDS DB by Nucleotide ID:NM_001376914Re-query CCDS DB by Protein ID:NP_001363843Link to BLAST:NP_001363843.1

Chromosomal Locations for CCDS 93145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30449087 30449244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461310 30461479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461555 30461694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30462086 30462192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30464820 30464903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466334 30466394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466982 30467077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30468508 30468696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30470019 30470075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGAGTTCCGGAAGACCATGGATATTGACCATATCCTTGATTGGCAGCCCCCAGAGGTGATCCAGAAGT
ACATGCCTGGGGGCCTGTGTGGCTATGACCGTGATGGCTGCCCCGTGTGGTATGACATCATTGGGCCACT
TGATCCCAAGGGGTTGCTCTTCTCAGTCACCAAGCAGGACCTGCTCAAGACCAAGATGAGGGACTGTGAG
CGCATCCTGCATGAGTGTGACCTGCAGACAGAGAGGCTAGGGAAGAAGATTGAGACCATCGTGATGATAT
TTGACTGTGAGGGCCTGGGACTGAAACACTTCTGGAAACCTCTGGTAGAAGTGTACCAGGAGTTCTTTGG
CCTCCTTGAAGAGAATTACCCAGAGACCCTGAAGTTCATGCTCATCGTGAAAGCTACCAAACTGTTCCCT
GTGGGCTACAACCTCATGAAGCCATTCCTGAGTGAGGACACTCGCAGGAAAATTATTGTGTTGGGAAATA
ACTGGAAGGAAGGTTTGCTGAAACTCATCAGTCCTGAGGAACTGCCTGCCCAGTTTGGGGGCACCCTGAC
TGACCCAGATGGGAACCCCAAATGTTTAACCAAGATTAACTATGGCGGGGAGATCCCCAAGTCCATGTAC
GTGCGGGACCAGGTGAAGACTCAGTACGAGCACTCGGTGCAGATCAACCGCGGCTCATCACACCAAGTGG
AATACGAGATCCTATTTCCAGGCTGCGTTCTCAGGTGGCAGTTCTCATCTGATGGTGCGGACATCGGCTT
CGGAGTTTTCCTGAAGACCAAGATGGGGGAGCGACAGCGGGCAGGGGAGATGACAGATGTTCTACCCAGC
CAGCGCTATAACGCCCACATGGTGCCCGAGGATGGGAACCTCACCTGCTCAGAGGCCGGCGTCTATGTGG
AAAGTGAGTCTGGGAAGTCTTGCTGTCATCTGCCCGTGATTATATGCAGCCATGAGCTACAGAACTCACA
CTCAAACTCGCAAGTGATGGCATACCAAATGGTACGAAAATGCAAGCTAAGTAGGCCTTTACCCCTCCCT
GCCAGTAACTAA

Translation (353 aa):
MEFRKTMDIDHILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCE
RILHECDLQTERLGKKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFP
VGYNLMKPFLSEDTRRKIIVLGNNWKEGLLKLISPEELPAQFGGTLTDPDGNPKCLTKINYGGEIPKSMY
VRDQVKTQYEHSVQINRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQRAGEMTDVLPS
QRYNAHMVPEDGNLTCSEAGVYVESESGKSCCHLPVIICSHELQNSHSNSQVMAYQMVRKCKLSRPLPLP
ASN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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