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Report for CCDS93146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93146.1 Public Homo sapiens 22 SEC14L6 24 110 108 CCDS HistoryNCBI Gene:730005Re-query CCDS DB by CCDS ID:93146.1Re-query CCDS DB by GeneID:730005See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93146.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000687231.1 ENSP00000510258.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687231.1Link to Ensembl Protein Viewer:ENSP00000510258.1Re-query CCDS DB by Nucleotide ID:ENST00000687231Re-query CCDS DB by Protein ID:ENSP00000510258
Original member Current member NCBI NM_001353443.2 NP_001340372.1 Accepted alive Link to Nucleotide Sequence:NM_001353443.2Link to Protein Sequence:NP_001340372.1Re-query CCDS DB by Nucleotide ID:NM_001353443Re-query CCDS DB by Protein ID:NP_001340372Link to BLAST:NP_001340372.1

Chromosomal Locations for CCDS 93146.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30525067 30525109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30525611 30525750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30525826 30525932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30529087 30529170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30529289 30529349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30531903 30531998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30532525 30532713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30532797 30532856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30533996 30534007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGCTGAGGAAGCATATGGAGTTCCGGAAGCAACAAGACCTGGCCAACATCCTTGCCTGGCAGCCCCCAG
AGGTGGTCAGGCTGTACAACGCTAACGGCATATGCGGCCACGACGGTGAGGGCAGCCCTGTCTGGTACCA
CATTGTGGGAAGCCTGGACCCCAAAGGCCTCTTGCTCTCAGCCTCCAAACAGGAGTTGCTCAGGGACAGC
TTCCGGAGCTGCGAGCTGCTCCTGCGGGAGTGTGAGCTGCAGAGTCAGAAGCTGGGGAAGAGGGTGGAGA
AAATCATAGCTATTTTTGGTCTCGAAGGGCTGGGCCTGAGGGATCTGTGGAAGCCAGGAATAGAGCTTCT
CCAGGAGTTTTTCTCAGCACTTGAAGCAAATTACCCTGAGATCTTGAAGAGTTTAATTGTTGTGAGAGCC
CCCAAGCTATTCGCCGTAGCCTTCAACCTGGTCAAGTCTTACATGAGTGAAGAGACACGCAGGAAGGTGG
TGATTCTCGGAGACAACTGGAAGCAGGAGCTGACAAAATTCATCAGCCCCGACCAGCTGCCCGTGGAGTT
TGGGGGGACCATGACTGACCCCGATGGCAACCCCAAGTGCCTGACCAAGATCAACTACGGGGGTGAGGTG
CCCAAGAGCTACTACCTGTGCAAGCAGGTGAGGCTGCAGTATGAGCACACGAGGTCCGTGGGCCGCGGCT
CCTCCCTGCAGGTGGAGAACGAGATCCTGTTCCCGGGCTGTGTGCTCAGATGTCCTGAGGTTTTACAACA
CCTACAGCCTGGTTCATTCTAA

Translation (263 aa):
MLRKHMEFRKQQDLANILAWQPPEVVRLYNANGICGHDGEGSPVWYHIVGSLDPKGLLLSASKQELLRDS
FRSCELLLRECELQSQKLGKRVEKIIAIFGLEGLGLRDLWKPGIELLQEFFSALEANYPEILKSLIVVRA
PKLFAVAFNLVKSYMSEETRRKVVILGDNWKQELTKFISPDQLPVEFGGTMTDPDGNPKCLTKINYGGEV
PKSYYLCKQVRLQYEHTRSVGRGSSLQVENEILFPGCVLRCPEVLQHLQPGSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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