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Report for CCDS93280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93280.1 Public Homo sapiens 3 IQCF6 24 110 108 CCDS HistoryNCBI Gene:440956Re-query CCDS DB by CCDS ID:93280.1Re-query CCDS DB by GeneID:440956See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 93280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000667863.2 ENSP00000499268.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000667863.2Link to Ensembl Protein Viewer:ENSP00000499268.1Re-query CCDS DB by Nucleotide ID:ENST00000667863Re-query CCDS DB by Protein ID:ENSP00000499268
Original member Current member NCBI NM_001368369.1 NP_001355298.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001368369.1Link to Protein Sequence:NP_001355298.1Re-query CCDS DB by Nucleotide ID:NM_001368369Re-query CCDS DB by Protein ID:NP_001355298Link to BLAST:NP_001355298.1

Chromosomal Locations for CCDS 93280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51778623 51778991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51779153 51779224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGACACGCAAAATGTGAGTAAGGCCCTTGCAGTAGGGACTTACCTGACAGGTAATGAACCGTGTCTAA
ATTTAGAGAAGACAGCCATAAAGATTCAGTCATGGTGGCGTGGAAACATGGTGCGCCGGACGTTACTGCA
GGCAGCACTCAGAGCCTGGGTCATCCAGTGCTGGTGGAGGTCAATGCAGGCCAAGATGTTGGAGCAAAGA
CGGCGCCTGGCACTAAGACTCTATACCTGCCAGGAGTGGGCGGTGGTGAAGGTGCAGGCACAGGTTCGAA
TGTGGCAGGCCCGCAGGCGGTTCCTCCAGGCACGCCAAGCGGCCTGCATCATCCAGTCTCACTGGCGCTG
GCATGCCAGCCAAACCCGAGGCCTGATCCGGGGCCACTATGAGGTCAGAGCCAGCCGGCTGGAGCTTGAC
ATCGAAATCCTCATGACCTAG

Translation (146 aa):
MDTQNVSKALAVGTYLTGNEPCLNLEKTAIKIQSWWRGNMVRRTLLQAALRAWVIQCWWRSMQAKMLEQR
RRLALRLYTCQEWAVVKVQAQVRMWQARRRFLQARQAACIIQSHWRWHASQTRGLIRGHYEVRASRLELD
IEILMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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