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Report for CCDS93379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93379.1 Public Homo sapiens 3 IFT122 24 110 108 CCDS HistoryNCBI Gene:55764Re-query CCDS DB by CCDS ID:93379.1Re-query CCDS DB by GeneID:55764See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000693588.1 ENSP00000509216.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693588.1Link to Ensembl Protein Viewer:ENSP00000509216.1Re-query CCDS DB by Nucleotide ID:ENST00000693588Re-query CCDS DB by Protein ID:ENSP00000509216
Current member NCBI NM_001410815.1 NP_001397744.1 Accepted alive Link to Nucleotide Sequence:NM_001410815.1Link to Protein Sequence:NP_001397744.1Re-query CCDS DB by Nucleotide ID:NM_001410815Re-query CCDS DB by Protein ID:NP_001397744Link to BLAST:NP_001397744.1

Chromosomal Locations for CCDS 93379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129440331 129440371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129449871 129449937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129451914 129451998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129463560 129463626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129464635 129464781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129469342 129469417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129476315 129476506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129476663 129476801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129478016 129478218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129479785 129479922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129481530 129481694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129483485 129483682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129488257 129488397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129492141 129492194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129495446 129495607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129499902 129500068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129502711 129502882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129504319 129504421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129506409 129506549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129507668 129507762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129512312 129512412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129514389 129514554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129515488 129515599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129517469 129517594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129519107 129519186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129519568 129519732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129520176 129520265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGAGGGCCGTGTTGACGTGGAGAGATAAAGCCGAGCACTGTATAAATGACATCGCATTTAAGCCTGATG
GAACTCAACTGATTTTGGCTGCCGGAAGCAGATTACTGGTTTATGACACCTCTGATGGCACCTTACTTCA
GCCCCTCAAGGGACACAAAGACACTGTGTACTGTGTGGCATATGCGAAGGATGGGTTGTGGTCTCCTGAA
CAGAAGTCTGTCTCCAAACACAAATCAAGCAGCAAGATCATCTGCTGCAGCTGGACAAATGATGGTCAGT
ACCTGGCGCTGGGGATGTTCAATGGGATCATCAGCATACGGAACAAAAATGGCGAGGAGAAAGTAAAGAT
CGAGCGGCCGGGGGGCTCCCTCTCGCCAATATGGTCCATCTGCTGGAACCCTTCAAGAGAGGAACGTAAT
GACATCCTGGCTGTGGCTGACTGGGGACAGAAAGTTTCCTTCTACCAGCTGAGTGGAAAACAGATTGGAA
AGGATCGGGCACTGAACTTTGACCCCTGCTGCATCAGCTACTTTACTAAAGGCGAGTACATTTTGCTGGG
GGGTTCAGACAAGCAAGTATCTCTTTTCACCAAGGATGGAGTGCGGCTTGGGACTGTTGGGGAGCAGAAC
TCCTGGGTGTGGACGTGTCAAGCGAAACCGGATTCCAACTATGTGGTGGTCGGCTGCCAGGACGGCACCA
TTTCCTTCTACCAGCTTATTTTCAGCACAGTCCATGGGCTTTACAAGGACCGCTATGCCTACAGGGATAG
CATGACTGACGTCATTGTGCAGCACCTGATCACTGAGCAGAAAGTTCGGATTAAATGCAAAGAGCTTGTC
AAGAAGATTGCCATCTACAGAAATCGATTGGCTATCCAACTGCCAGAGAAAATCCTCATCTATGAGTTGT
ATTCAGAGGACTTATCAGACATGCATTACCGGGTAAAGGAGAAGATTATCAAGAAGTTTGAGTGCAACCT
CCTGGTGGTGTGTGCCAATCACATCATCCTGTGCCAGGAGAAACGGCTGCAGTGCCTGTCCTTCAGCGGA
GTGAAGGAGCGGGAGTGGCAGATGGAGTCTCTCATTCGTTACATCAAGGTGATCGGTGGCCCTCCTGGAA
GAGAAGGCCTCTTAGTGGGGCTGAAGAATGGACAGATCCTGAAGATCTTCGTGGACAATCTCTTTGCTAT
CGTCCTGCTGAAGCAGGCCACAGCTGTGCGCTGCTTGGACATGAGTGCCTCCCGTAAGAAGCTGGCCGTG
GTAGATGAAAATGACACTTGCCTGGTGTATGACATCGACACCAAGGAGCTGCTTTTTCAGGAACCAAACG
CCAACAGTGTAGCTTGGAACACCCAGTGTGAGGACATGCTCTGCTTCTCGGGAGGAGGCTACCTCAACAT
CAAAGCCAGCACCTTCCCTGTGCACCGGCAGAAGCTGCAGGGCTTTGTGGTCGGCTACAATGGCTCCAAG
ATCTTCTGCCTCCATGTCTTCTCCATTTCTGCCGTGGAGGTGCCGCAGTCCGCTCCCATGTACCAGTACC
TGGATAGGAAACTGTTCAAGGAAGCCTACCAGATTGCTTGCTTGGGTGTCACAGACACTGATTGGCGTGA
ACTGGCCATGGAAGCGCTAGAAGGTTTAGATTTTGAAACAGCAAAGAAGGCCTTCATCAGAGTACAAGAC
CTCCGATATTTAGAGCTCATCAGCAGCATTGAGGAGAGGAAGAAGCGGGGAGAGACCAACAATGACCTGT
TTCTGGCAGATGTGTTTTCCTACCAGGGGAAGTTCCATGAGGCCGCCAAACTGTACAAGAGGAGTGGGCA
CGAGAACCTCGCGCTTGAAATGTACACCGACCTCTGCATGTTTGAGTATGCCAAGGATTTCCTTGGATCT
GGAGACCCCAAAGAAACAAAGATGCTAATCACCAAACAGGCTGACTGGGCCAGAAATATCAAGGAGCCCA
AAGCCGCCGTGGAGATGTACATCTCAGCAGGAGAGCACGTCAAGGCCATCGAGATCTGTGGTGACCATGG
CTGGGTTGACATGTTGATCGACATCGCCCGCAAACTGGACAAGGCTGAGCGCGAGCCCCTGCTGCTGTGC
GCTACCTACCTCAAGAAGCTGGACAGCCCTGGCTATGCTGCTGAGACCTACCTGAAGATGGGTGACCTCA
AGTCCCTGGTGCAGCTGCACGTGGAGACCCAGCGCTGGGATGAGGCCTTTGCTTTGGGTGAGAAGCATCC
TGAGTTTAAGGATGACATCTACATGCCGTATGCTCAGTGGCTAGCAGAGAACGATCGCTTTGAGGAAGCC
CAGAAAGCGTTCCACAAGGCTGGGCGACAGAGAGAAGCGGTCCAGGTGCTGGAGCAGCTCACAAACAATG
CCGTGGCGGAGAGCAGGTTTAATGATGCTGCCTATTATTACTGGATGCTGTCCATGCAGTGCCTCGATAT
AGCTCAAGATCCTGCCCAGAAGGACACAATGCTTGGCAAGTTCTACCACTTCCAGCGTTTGGCAGAGCTG
TACCATGGTTACCATGCCATCCATCGCCACACGGAAGATCCGTTCAGTGTCCATCGTCCTGAAACTCTTT
TCAACATCTCCAGGTTCCTGCTGCACAGCCTGCCCAAGGACACCCCCTCGGGCATCTCTAAAGTGAAAAT
ACTCTTCACCTTGGCCAAGCAGAGCAAGGCCCTCGGTGCCTACAGGCTGGCCCGGCACGCCTATGACAAG
CTGCGTGGCCTGTACATCCCTGCCAGATTCCAAAAGTCCATTGAGCTGGGTACCCTGACCATCCGCGCCA
AGCCCTTCCACGACAGTGAGGAGTTGGTGCCCTTGTGCTACCGCTGCTCCACCAACAACCCGCTGCTCAA
CAACCTGGGCAACGTCTGCATCAACTGCCGCCAGCCCTTCATCTTCTCCGCCTCTTCCTACGACGTGCTA
CACCTGGTTGAGTTCTACCTGGAGGAAGGGATCACTGATGAAGAAGCCATCTCCCTCATCGACCTGGAGG
TGCTGAGACCCAAGCGGGATGACAGACAGCTAGAGATTGCAAACAACAGCTCCCAGATTCTGCGGCTAGT
GGAGACCAAGGACTCCATCGGAGATGAGGACCCGTTCACAGCTAAGCTGAGCTTTGAGCAAGGTGGCTCA
GAGTTCGTGCCAGTGGTGGTGAGCCGGCTGGTGCTGCGCTCCATGAGCCGCCGGGATGTCCTCATCAAGC
GATGGCCCCCACCCCTGAGGTGGCAATACTTCCGCTCACTGCTGCCTGACGCCTCCATTACCATGTGCCC
CTCCTGCTTCCAGATGTTCCATTCTGAGGACTATGAGTTGCTGGTGCTTCAGCATGGCTGCTGCCCCTAC
TGCCGCAGGTGCAAGGATGACCCTGGCCCATGA

Translation (1130 aa):
MRAVLTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGLWSPE
QKSVSKHKSSSKIICCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREERN
DILAVADWGQKVSFYQLSGKQIGKDRALNFDPCCISYFTKGEYILLGGSDKQVSLFTKDGVRLGTVGEQN
SWVWTCQAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKELV
KKIAIYRNRLAIQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECNLLVVCANHIILCQEKRLQCLSFSG
VKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRKKLAV
VDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHRQKLQGFVVGYNGSK
IFCLHVFSISAVEVPQSAPMYQYLDRKLFKEAYQIACLGVTDTDWRELAMEALEGLDFETAKKAFIRVQD
LRYLELISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALEMYTDLCMFEYAKDFLGS
GDPKETKMLITKQADWARNIKEPKAAVEMYISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC
ATYLKKLDSPGYAAETYLKMGDLKSLVQLHVETQRWDEAFALGEKHPEFKDDIYMPYAQWLAENDRFEEA
QKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCLDIAQDPAQKDTMLGKFYHFQRLAEL
YHGYHAIHRHTEDPFSVHRPETLFNISRFLLHSLPKDTPSGISKVKILFTLAKQSKALGAYRLARHAYDK
LRGLYIPARFQKSIELGTLTIRAKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFIFSASSYDVL
HLVEFYLEEGITDEEAISLIDLEVLRPKRDDRQLEIANNSSQILRLVETKDSIGDEDPFTAKLSFEQGGS
EFVPVVVSRLVLRSMSRRDVLIKRWPPPLRWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHGCCPY
CRRCKDDPGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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