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Report for CCDS93401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93401.1 Public Homo sapiens 3 TFDP2 24 110 108 CCDS HistoryNCBI Gene:7029Re-query CCDS DB by CCDS ID:93401.1Re-query CCDS DB by GeneID:7029See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000479040.5 ENSP00000417585.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479040.5Link to Ensembl Protein Viewer:ENSP00000417585.1Re-query CCDS DB by Nucleotide ID:ENST00000479040Re-query CCDS DB by Protein ID:ENSP00000417585
Original member Current member NCBI NM_001375756.1 NP_001362685.1 Accepted alive Link to Nucleotide Sequence:NM_001375756.1Link to Protein Sequence:NP_001362685.1Re-query CCDS DB by Nucleotide ID:NM_001375756Re-query CCDS DB by Protein ID:NP_001362685Link to BLAST:NP_001362685.1
Original member Current member NCBI NM_001375778.1 NP_001362707.1 Accepted alive Link to Nucleotide Sequence:NM_001375778.1Link to Protein Sequence:NP_001362707.1Re-query CCDS DB by Nucleotide ID:NM_001375778Re-query CCDS DB by Protein ID:NP_001362707Link to BLAST:NP_001362707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362685.1 385 Q14188-4 385 100% 0 0
NP_001362707.1 385 Q14188-4 385 100% 0 0

Chromosomal Locations for CCDS 93401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141952513 141952696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141952911 141953016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141959674 141959840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141963812 141963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141970073 141970141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141974048 141974191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141978520 141978682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141993538 141993585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141995020 141995141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142005441 142005443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGATTATAAGCACACCACAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTG
CACCAGCAATGGTTACTCAGACACACATAGCAGAAGCTACTGGCTGGGTCCCTGGTGATAGAAAACGGGC
TAGAAAATTTATAGACTCTGATTTTTCAGAAAGTAAACGAAGCAAAAAAGGAGATAAAAATGGGAAAGGC
TTGAGACACTTTTCAATGAAAGTGTGTGAGAAAGTTCAACGAAAAGGTACAACATCGTACAATGAAGTCG
CTGATGAGCTGGTGTCAGAGTTCACCAATTCAAATAACCATTTGGCTGCTGATTCGGCTTATGATCAGAA
GAACATTAGGCGAAGAGTTTATGATGCTTTAAATGTGCTAATGGCAATGAACATAATTTCAAAGGAAAAA
AAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGCTCAGGAATGTCAGAATCTGGAGATAGAGAAGC
AGAGGCGGATAGAACGGATAAAGCAGAAGCGGGCCCAGCTGCAAGAACTTCTCCTACAGCAAATCGCTTT
CAAAAACCTGGTACAGAGAAATCGACAAAATGAGCAGCAAAACCAGGGCCCGCCGGCTCTGAACTCTACC
ATTCAGCTGCCATTCATAATCATCAATACAAGCAGAAAAACAGTCATAGATTGCAGCATCTCCAGTGACA
AGTTTGAGTATCTTTTCAATTTTGACAACACCTTTGAGATCCATGATGACATAGAAGTACTAAAGCGGAT
GGGAATGTCGTTTGGCCTGGAGTCAGGCAAATGCTCTCTGGAGGATCTGAAACTTGCGAAATCCCTGGTG
CCAAAGGCTTTAGAAGGTTATATCACAGATATCTCCACAGGACCTTCTTGGTTAAATCAGGGACTACTTC
TGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACCACTGGTGCCACCTTACCCCAGTCAAGTGTAAA
CCAAGGGTTATGCTTGGATGCAGAAGTGGCCTTAGCAACTGGGCAGTTCCTGGCCCCAAACAGTCACCAG
TCCAGCAGTGCGGCCTCTCACTGCTCCGAGTCCCGAGGCGAGACCCCCTGTTCGTTCAATGATGAAGATG
AGGAAGATGATGAGGAGGATTCCTCCTCCCCAGAATAA

Translation (385 aa):
MIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSESKRSKKGDKNGKG
LRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEK
KEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNST
IQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLV
PKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLTTGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQ
SSSAASHCSESRGETPCSFNDEDEEDDEEDSSSPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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