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Report for CCDS93476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93476.1 Public Homo sapiens 4 SH3TC1 24 110 108 CCDS HistoryNCBI Gene:54436Re-query CCDS DB by CCDS ID:93476.1Re-query CCDS DB by GeneID:54436See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508641.2 ENSP00000426035.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508641.2Link to Ensembl Protein Viewer:ENSP00000426035.2Re-query CCDS DB by Nucleotide ID:ENST00000508641Re-query CCDS DB by Protein ID:ENSP00000426035
Original member Current member NCBI NM_001318480.2 NP_001305409.2 Accepted alive Link to Nucleotide Sequence:NM_001318480.2Link to Protein Sequence:NP_001305409.2Re-query CCDS DB by Nucleotide ID:NM_001318480Re-query CCDS DB by Protein ID:NP_001305409Link to BLAST:NP_001305409.2

Chromosomal Locations for CCDS 93476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8209804 8209822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8212701 8212828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8214475 8214580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8216111 8216257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8216957 8217167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8218271 8218347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8219335 8219530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8222840 8222970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8225175 8225216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8226980 8228644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8231976 8232156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8233363 8233513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8235433 8235555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8236278 8236428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8237474 8237670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8240698 8240955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3783 nt):
ATGGGGGTTTATCCCACAGACCTGACCCTGCAGCTGCTGGCTGTGCGGAGGAAGAGCAGACTGCGGGACC
CCGGCCTACAGCAGACCCTCCGGGGCCAGCTCCGCCTGCTGGAGAATGATAGCCGGGAGATGGCCCGCGT
GCTTGGGGAATTATCAGCCAGGCTGCTGTCCATCCACAGTGACCAGGACCGGATCGTGGTGACGTTTAAG
ACTTTTGAAGAAATCTGGAAGTTTTCCACCTACCATGCTCTCGGCTTCACTCATCACTGCCTGGCAAACC
TGCTCATGGACCAGGCCTTCTGGCTGCTCTTGCCCAGTGAGGAGGAGGAGACGGCCATCCAAGTCCATGT
GGATGAGAACGCCTTAAGGCTGACCCACGAGAGCCTCCTCATCCAAGAAGGGCCCTTCTTTGTCCTGTGT
CCTGACCACCATGTGAGAGTGATGACGGGTCCCCGGGATGCAGGAAATGGCCCCCAGGCCCTCAGGCAGG
CTTCGGGGGCACCCCAGGGAGAGGCGGCCCCGGAAACAGACTCTTCACCGCCGAGCCCCAGCGTGTCCTC
CGAGGAGGTGGCAGTGGCGGCCGCCCCGGAGCCTTTGATTCCATTTCATCAGTGGGCTCTTAGGATCCCC
CAGGACCCCATCGACGATGCCATGGGTGGCCCTGTGATGCCCGGCAACCCGCTGATGGCTGTGGGCCTGG
CCTCGGCATTGGCAGACTTCCAGGGCTCGGGGCCCGAAGAGATGACCTTCCGAGGTGGCGACCTCATCGA
GATCCTTGGGGCGCAGGTGCCCAGCCTGCCCTGGTGCGTGGGCCGACACGCAGCCTCGGGCCGGGTGGGG
TTTGTGCGGAGCAGCCTCATCAGCATGCAGGGCCCCGTGTCCGAGTTGGAAAGTGCGATTTTTCTCAATG
AGGAAGAAAAGTCATTCTTCAGCGAGGGCTGCTTTTCTGAGGAGGATGCCAGGCAGTTGCTGAGGCGGAT
GTCGGGCACCGATGTCTGCAGCGTGTACAGCCTGGACTCAGTAGAGGAAGCTGAGACCGAGCAGCCGCAG
GAAAAAGAAATACCTCCACCTTGCCTGAGCCTGGAGCCACAGGAGACCTTGCAGAAGGTGAAGAATGTTC
TGGAACAATGCAAGACCTGCCCAGGCTGCCCCCAGGAGCCAGCGTCCTGGGGTCTCTGTGCGGCATCCAG
CGACGTGAGCTTGCAGGACCCCGAGGAGCCCTCCTTCTGCTTGGAAGCCGAGGACGACTGGGAGGACCCA
GAGGCCCTGAGCTCACTGCTGCTGTTCCTGAACGCCCCTGGGTACAAGGCCAGCTTCCGTGGCCTGTACG
ATGTGGCGCTGCCGTGGCTGAGCAGCGTGTTCCGCAGCTTCAGCGACGAGGAGGAGCTGACTGGGCGCCT
GGCACAGGCCCGGGGGGCGGCCAAGAAAGCTGGCCTCCTCATGGCCCTGGCCAGGCTCTGCTTCCTCCTG
GGGCGGCTGTGCAGCAGGAGGCTCAAGCTGTCCCAGGCCCGGGTGTACTTTGAGGAAGCGCTGGGGGCCC
TGGAGGGCAGCTTCGGGGACCTGTTCCTAGTGGTGGCTGTGTACGCCAACCTGGCCAGCATTTACCGGAA
GCAGAAGAACCGGGAGAAGTGTGCACAGGTGGTGCCCAAAGCCATGGCCCTGCTCCTGGGGACGCCTGAC
CACATCTGCAGCACCGAGGCGGAGGGGGAGCTCCTGCAGCTGGCGCTGCGGCGGGCGGTGGGTGGCCAGA
GCCTGCAGGCCGAGGCCCGGGCCTGCTTCCTGCTGGCCAGGCACCACGTGCACCTCAAGCAGCCCGAGGA
GGCCCTGCCCTTCCTAGAGCGGCTGCTGCTTTTGCACAGGGACTCGGGAGCCCCAGAGGCCGCGTGGCTC
TCAGACTGCTACCTACTCCTGGCTGACATCTACAGCCGCAAGTGCCTGCCCCACCTGGTGCTGAGCTGTG
TCAAGGTGGCCTCATTGCGGACACGGGGCTCGCTGGCCGGCTCGCTGAGGAGTGTGAACCTGGTGCTCCA
GAACGCCCCCCAGCCCCACAGCCTCCCTGCCCAAACTTCCCACTACCTCAGGCAAGCGCTGGCCTCCCTG
ACCCCGGGCACAGGCCAGGCGCTGCGCGGCCCCCTCTACACCAGCTTGGCCCAGCTGTACAGCCACCATG
GCTGCCACGGCCCGGCCATCACCTTCATGACGCAGGCAGTGGAAGCCAGTGCTATTGCCGGAGTCCGTGC
CATCGTGGACCACCTGGTGGCCCTGGCCTGGCTGCACGTGCTTCATGGGCAGAGCCCGGTGGCCCTGGAC
ATCCTGCAGTCTGTCCGGGATGCAGTGGTGGCCAGCGAGGACCAGGAGGGCGTGATTGCCAACATGGTGG
CCGTGGCTCTGAAGAGGACGGGCCGGACGAGGCAGGCAGCTGAGAGCTACTACCGCGCCCTGCGGGTGGC
TCGGGACCTGGGCCAGCAAAGGAACCAGGCAGTGGGGCTGGCCAACTTCGGGGCCCTGTGCCTGCATGCG
GGTGCCAGCAGGCTGGCCCAGCACTACCTCCTGGAGGCCGTGCGGCTGTTCTCGAGGCTGCCCCTTGGGG
AGTGTGGCCGGGACTTCACCCACGTGCTCCTGCAGCTGGGCCATCTCTGCACCCGCCAGGGCCCGGCCCA
GCAGGGCAAGGGCTACTACGAGTGGGCCCTTCTGGTCGCCGTGGAGATGGGCCACGTGGAGAGCCAGCTG
CGGGCCGTCCAGCGGCTGTGCCACTTCTACAGCGCCGTCATGCCCAGCGAGGCCCAGTGTGTCATCTACC
ATGAGCTCCAGCTCTCCCTGGCCTGCAAGGTGGCCGACAAGGTGCTGGAGGGGCAGCTCCTGGAGACCAT
CAGCCAGCTCTACCTGTCCCTGGGCACCGAGCGGGCCTACAAATCCGCACTGGACTACACCAAACGAAGT
CTGGGGATTTTCATTGACCTCCAGAAGAAAGAGAAGGAGGCGCATGCCTGGCTGCAAGCAGGGAAGATCT
ATTACATCTTGCGGCAGAGCGAGCTGGTGGACCTCTACATCCAGGTGGCACAGAACGTGGCCCTGTACAC
AGGCGACCCCAACCTGGGGCTGGAGCTGTTTGAGGCGGCTGGAGACATCTTCTTCGACGGGGCCTGGGAG
CGGGAGAAAGCTGTGTCCTTCTACCGGGACCGGGCCCTGCCCCTGGCAGTGACTACGGGCAACCGCAAGG
CGGAGCTGCGGCTGTGCAACAAGCTGGTGGCACTGCTGGCCACGCTGGAGGAGCCCCAGGAGGGCTTGGA
GTTTGCCCACATGGCCCTAGCACTCAGCATCACCCTGGGGGACCGGCTGAACGAGCGCGTGGCCTACCAC
CGGCTGGCCGCCCTGCAACACCGACTGGGCCATGGCGAGCTGGCAGAGCACTTCTACCTCAAGGCCCTGT
CGCTCTGCAACTCGCCGCTGGAGTTTGACGAGGAGACCCTCTACTACGTGAAGGTGTACCTGGTGCTCGG
TGACATCATCTTCTACGACCTGAAGGACCCGTTTGATGCAGCCGGGTACTACCAGCTGGCGCTGGCAGCC
GCCGTGGACCTGGGCAACAAGAAGGCACAGCTGAAGATCTACACGCGGCTGGCCACCATCTACCACAACT
TCCTCCTGGACCGTGAGAAGTCGCTCTTCTTCTACCAGAAGGCCAGGACCTTCGCCACAGAGCTCAACGT
CCGCAGGGTCAACCTGCCTCCTCTGCCACTCTGCGGGTGGGCCCCCTGGTTGGCCCCCAGCCACCCTCGC
TGA

Translation (1260 aa):
MGVYPTDLTLQLLAVRRKSRLRDPGLQQTLRGQLRLLENDSREMARVLGELSARLLSIHSDQDRIVVTFK
TFEEIWKFSTYHALGFTHHCLANLLMDQAFWLLLPSEEEETAIQVHVDENALRLTHESLLIQEGPFFVLC
PDHHVRVMTGPRDAGNGPQALRQASGAPQGEAAPETDSSPPSPSVSSEEVAVAAAPEPLIPFHQWALRIP
QDPIDDAMGGPVMPGNPLMAVGLASALADFQGSGPEEMTFRGGDLIEILGAQVPSLPWCVGRHAASGRVG
FVRSSLISMQGPVSELESAIFLNEEEKSFFSEGCFSEEDARQLLRRMSGTDVCSVYSLDSVEEAETEQPQ
EKEIPPPCLSLEPQETLQKVKNVLEQCKTCPGCPQEPASWGLCAASSDVSLQDPEEPSFCLEAEDDWEDP
EALSSLLLFLNAPGYKASFRGLYDVALPWLSSVFRSFSDEEELTGRLAQARGAAKKAGLLMALARLCFLL
GRLCSRRLKLSQARVYFEEALGALEGSFGDLFLVVAVYANLASIYRKQKNREKCAQVVPKAMALLLGTPD
HICSTEAEGELLQLALRRAVGGQSLQAEARACFLLARHHVHLKQPEEALPFLERLLLLHRDSGAPEAAWL
SDCYLLLADIYSRKCLPHLVLSCVKVASLRTRGSLAGSLRSVNLVLQNAPQPHSLPAQTSHYLRQALASL
TPGTGQALRGPLYTSLAQLYSHHGCHGPAITFMTQAVEASAIAGVRAIVDHLVALAWLHVLHGQSPVALD
ILQSVRDAVVASEDQEGVIANMVAVALKRTGRTRQAAESYYRALRVARDLGQQRNQAVGLANFGALCLHA
GASRLAQHYLLEAVRLFSRLPLGECGRDFTHVLLQLGHLCTRQGPAQQGKGYYEWALLVAVEMGHVESQL
RAVQRLCHFYSAVMPSEAQCVIYHELQLSLACKVADKVLEGQLLETISQLYLSLGTERAYKSALDYTKRS
LGIFIDLQKKEKEAHAWLQAGKIYYILRQSELVDLYIQVAQNVALYTGDPNLGLELFEAAGDIFFDGAWE
REKAVSFYRDRALPLAVTTGNRKAELRLCNKLVALLATLEEPQEGLEFAHMALALSITLGDRLNERVAYH
RLAALQHRLGHGELAEHFYLKALSLCNSPLEFDEETLYYVKVYLVLGDIIFYDLKDPFDAAGYYQLALAA
AVDLGNKKAQLKIYTRLATIYHNFLLDREKSLFFYQKARTFATELNVRRVNLPPLPLCGWAPWLAPSHPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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