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Report for CCDS93485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93485.1 Public Homo sapiens 4 LCORL 24 110 108 CCDS HistoryNCBI Gene:254251Re-query CCDS DB by CCDS ID:93485.1Re-query CCDS DB by GeneID:254251See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93485.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000635767.2 ENSP00000490600.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000635767.2Link to Ensembl Protein Viewer:ENSP00000490600.1Re-query CCDS DB by Nucleotide ID:ENST00000635767Re-query CCDS DB by Protein ID:ENSP00000490600
Original member Current member NCBI NM_001394446.1 NP_001381375.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394446.1Link to Protein Sequence:NP_001381375.1Re-query CCDS DB by Nucleotide ID:NM_001394446Re-query CCDS DB by Protein ID:NP_001381375Link to BLAST:NP_001381375.1

Chromosomal Locations for CCDS 93485.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 17845888 17845901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17873388 17878213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17886068 17886161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17909094 17909345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17961903 17962032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17962970 17963049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17972820 17972885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 18021598 18021751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5616 nt):
ATGGACAAGGGAAGAGAGAGAATGGCCGCTGCCGCCGCCGCTGCTGCCGCCGCCGCCGCCGCCGCTCAGT
GCCGGAGCCCTCGGTGCGCGGCGGAGAGAAGAGGATTCCGGCGGGAACTCGACTCTTGGCGCCACCGCCT
CATGCACTGTGTAGGTTTTGAGAGTATTTTAGAAGGGCTTTATGGACCACGGCTACGAAGAGACCTCAGT
TTATTTGAAGACTGTGAACCAGAAGAGCTGACTGACTGGTCTATGGATGAAAAATGTTCATTTTGTAACC
TACAGAGAGAAGCAGTCAGTGATTGTATACCATCTCTTGATTCTTCACAGTCAACACCAACAGAGGAGCT
ATCATCTCAGGGCCAGTCCAACACTGATAAGATTGAATGCCAAGCAGAAAATTACCTAAATGCACTCTTT
CGAAAGAAAGATCTTCCTCAGAACTGTGATCCTAACATTCCCCTAGTTGCTCAGGAATTAATGAAAAAGA
TGATACGTCAATTTGCGATTGAGTACATTTCAAAAAGTGGTAAAACTCAAGAGAATAGAAATGGTTCAAT
TGGACCAAGTATAGTATGTAAAAGTATCCAAATGAATCAAGCAGAAAACTCCCTTCAGGAAGAGCAGGAA
GGCCCCTTAGACCTCACTGTGAATCGAATGCAAGAACAAAATACTCAGCAAGGGGATGGAGTGTTAGATC
TCTCTACAAAGAAAACCAGCATAAAATCTGAAGAGTCATCCATATGTGATCCTTCTTCTGAAAATTCAGT
GGCTGGTTCAACTGTTGATGCAAAATCAGAGGAAGCTACTAAAATGGAAAAAAGAAAATCAGCATTAAAC
AAAGTTTTGGAATCTTTGTGCATACATCACCAGCAACAAGTTTTGGCTATGTTGAAATTTCTAGTCCAAG
AGCAGAATGCTGCTTCTCTTTGCTGTTGTAATACATCATGTGTTGTGTCTTCAGAATCTCAAAAGCCCTT
AATCGAAGATGATTTATGTGGTCTGTTCTGTAGTTGTGAATATAGGCTGGCAGAAAGAGGTTGTTTACAA
AACGAAAAACAAAGCCCTGGTTTAGAACCTCTGCCAGTCTGTATTAAAGATTTACATTGTTTATCTTGCC
AAACTGTAACTGTTGAACACGTTAAGCCAGTAGTGAATAGAGGAATTGCAGACAGTTATAATTCTCACAG
GTGCTGTTCTGGACTGTTACCAAACATTCACTCTACAAAATCAGCCTTTCGTAGTCCTCTTTTGTCAAAG
GAAGTATGTGATCTTTCAGTCACTCTTAAAGATGCCTGTAGATCTCGAAGTCCCTCACCCCCACCATTAT
CACCTATAGAAACTGAAGGATTTGAAAAATTGAAAGACGTCATCTCAGAGATTTCAGCCTTAGAAAATAA
CAAACTTGAAGCAAACATTAACCAGCCTCCATCTCTCACACCAGCAGAAATCAGCAGCAATAAGAGTGAT
CATCAAGATAAAATACTTAAAACTAAAAAATCCAGTAACTCTTATTCTTTACTCTCAAATGACAGCAATA
ATTCTACTACAAATCATGAAAAAGGTGAAACTGCTGTAATTTTTCAAGATTTAATGGATCGCATTAATGA
AAAACTAAAATCAATAGAAACCACGGATATGACAAGCCTTGTAAAATTATCTAGCAGTGATTATAATACA
TATAATGATTTAAAATTGGGAGATTTCATAACATCTCTCTTGCATAATGCAAAAGCCAGTGATTATAGTT
TTATGGAATTATTGAGTCAACATGATAAAAAGGTAGAAAATAAAATTATTCAGACAAGATTTCGAAAGCG
TCAAGAAACTTTATTTGCAATGCGCAACTCCTCTGATTCACCCATGTTTAGAAGGCAGTCTTTACAGATA
AAAAGAGAACTTGCTAGTCTTGATGAAAATTTTACAAGAAAAAAATACACCGAAAAAAGTTCAAGGAAAT
TGACACAAAACAATGAGATATCTTCATCAGACAAAGGAGAATTCTATCATGACCAAGGGCCTTCTTTACA
AAATTCTAAAAGACTTCAAGGTAAAAATCATGCTGAAACATCATTTTCACCAAATTATGCATTACAGTCA
CTGCAACTACCTCTTCATAGTTCAGAAACTAACTTGTCTTTTAATGAATTTTCAGAAAGCTTTAAAACAA
CTTCCCCTGAGAAAATGAGCATAAGAAAGCCACAGGAGAAATCTGCAGATGGAAAACAATTTTTGCAAAA
TGATAGGAAAAATCCAAAGTTAGGTAATACTCAAACTCTTTTGAGAAATGATGTTTCTGGACTTTTGAGC
AGAACTAAACGAAATATTGTGCCTCCAGGGTGGTATTCTGTATATGTAACAAATAATTATGTTTTTAAAA
AATCCCCTAAAGCCAAAAAAGTATCCGAATCCACAACAAAAAACGATCCAGTGAAAAATATTCACATTGA
AAGCTCACACAATATAGACCTAAACAAAATTGCAATGAATTCTAATTTACAAGTGGTTGTGAAGCGTTTG
GAAGATACAATAAGTATAGCCAAAAAATCCTGGAATAATCAGCCATTATCAGAAGGATATAAAGCATCCA
AGAAATTGATAGAAATTGATGGTAAAGACCAACATGCTGACAGAAATATGACTCTTACTCTAAATAGAAT
GACATGCAAAGAACAGAGCTTATCAAAATCTGTGGTAGCATCCGGCAATATTATCAATAGTCACTGCATG
CCTACAGTGGATTTGAATAACAAAAGACTTGAAAATCTGAAAAAGTCATCTATTTTAGATATGGGTCGCT
TGATTTCCAGTGTTGAAAATGTACCAGCAAAATATGAAGGTACTGAAAGTTCATCTGTTTCCAACTATTC
TAGTCCTATCAAACTCATGTTTTTATCTGAGGTTAAAAGTAGTGAAGGGGTCAAATATACTTTAACTTCA
GTTGGCACTTCCCATTCAAATGTTGTTCTCCCTTCTGAAAAACCTACAACCCATCACGTAACTGAAGAAA
AAACAGAAACAAATGAGGATATCTCAAATGCGAACTCTGAAAATTATCACTCCAGTCATTATGATACTGA
TACTTTTCAAAGAGAACTAAACAAATTCAGTCATGCAAAAGAAACTGCAGGATCCTCTACAATGTTTATA
GGTGATATAAATAGTGATAAGCCACAAGAAGAACCTAAGGACAATTCAAGCAGTGCTACTGATCCATCTT
TTAAAAGAAAACCAGGTAGACCAAAAAAAATAGGTCCCCAAGTTGTGAAACAGATTAAGCGACCAATTGG
AAGACCACCAAAGCCTAAAATTGATCAAACAAACATCACTGTTTGCCAGAATGAGCCCTTTAGTGCTGGA
AGGAAAAGCCCAGAATGTCTCATATCAGAAGTAAAAGAAGGTATTTATAAAAAGAGTATTACAGTAACTG
TTATTTACGGAAGGTCAAGAAGAACTAAAAGGCATGTTTCTGAAGGAAGGGTAAACATAAGCAACCTTAT
GTCTTTAAACAATAATGCTGGTGATTTTCCAACTGAATATAATAGTCCCAGAAATATTAGTGAAGACAAA
ATTGACTTGGGTGAAAGAATAAGTGCTGTAGCAAGCTTGACTACTGAAAGTGAGATCTTGGGGTCTGGCT
TTGAATATGTGAGACCCATCAAGAACAAATCTGTGATACCTCAGCCTTCCAAGAACATTATTCGACCAAA
TCAGAAGCCTTTGGCAATAAGTAGGAAGCCTGGTAGACCGGCAAAAGTGAAAATCTCTGGCATATCTGTG
ACTATTAATAGAACTTCACCTCAGGAAAGAGAAGTAAGTATTAGCAGCTGCTTGCCTCCTTTAGAACAGG
ATAATACGTCAGGAAAAAATCTGCCTGAAGAAAAGTATGACCAACAGTGCACTCAAATGGATAAAATAAG
GCACACTGAAGCTGATATATTTAAAAATGGATCAAAACGTATGATTGCTACTGTACCTTTGAGACATTCT
ATTAGGGATAGAAAACCATCTCTGCATTTCTTACATTCATTAGCATCTTCTAGCTCACTTATTTATAGAA
ACGCTCTGCTCCATAAATCATATAAACTGCATTTGCAGAAAAATAAAAGTCAGAAGGAAAAACATAGGCA
CTCAAAGATGAAAATAGCTTACAAAGATACCCCAAGAAACAGACTTTCGCGGAATGCAAAAAAGTGTTTG
GAAGATAATAAATTAGTACCTATTTCTGAAGTATCCTTGGATCCTATAATTTCATCAAACCCTTTGCTCA
GGTGGTGGGCTACTTCTGCTTCAAATGATTCCTTATTAGAGGAATTAAACAATAGATTTGAGCAAATAAC
AAATGCTTGGGTGCAAGTAAGTGGAGATGAAGCTGAAAATTGTATTCATAAAAAAAGAGAACACATTGAA
AATGATCATTTCAAAGTAGCAAGCCCTTTGGAAACTTGTCTTTTAGAACTTGAAGTTTCACCTGTAAAAA
TGCTTTTTCAGAAAAAGTATGATTTGAATGAACTCTGTACTTGGTTTATGCAAACAACAGAAACACAGTC
TCTTTCACTAGTTAGAAAAGCAAATGCCCGAAACCCTTTGGAAGTAATAAATACCAGGGGAATCAAATTA
GGGACCAAATATTCTGACTTTAATGCCAGCCCCTTCAGAAAGCACTTTAAAAAATTTGCACTCTCTTCTC
CTTCAAAATCAGCAGAGAAATTGCATATACTGCATAAAGTGGCTAACTCTCCACTCTTAAATGTGAAAAG
TAATTTAGCAATAGCTAGATTAAAAAGGACTGAGTTTAAGAGGTTGCATCATGAAAGGTGGAAAAGAGAG
GGAAAGCTGCACAACCATGGAACAGTTGACTGGAACTCTAAAAGGAGAAACTTAAGATTTTTCTGCCAGA
ACCAATTTTTAAATAAGACTGAGGGAGAAACAAATGCTGACATCCCACTCCAAGGAAAAAGCATAGTAGA
TAATCAGTGTGTTTTGCCACCTGAGATCAGGGGTGACTTGCAGCAGAGGGTAGTAATGCCTGACTTCAAA
ATACATGCTAGTTTTGAGAATAAATTTAAGTCAGAAGCAAAAGAGAATGGAACAAATTGCAGCCAAAAAG
ACTTTCAAAAGGGACCAAGACTAGAAAATGTATGTCCTAATAGTTGGAGGTCAAAAACCTTAAAAGACTG
TAGAATATTTTTGAGGAAGCTCAACTGTCTTGAACACAGAAATACTTTTAAGCTAAATACAATCATTTAC
TCTCCTGAATCTACTGACAGTGGAAATACTCATCAGACTCATATGGAAGAATCAAAGCGCTTTACTTTAA
GATCTCATTCTGCTAGGCAAAATTCTTTTAAAAAGCAATCTAAAGAAATAGAAAATGCTAACACAAATAA
TCCTTCAGCTGATGAATTTGCTGACCATCTTGGCAATAGTAAATTAAGCAAATGTGTTAACTTTGACAAG
AATCCTGATAGTTTTGAAGTTCTTAGCAATTTGAACAAAAGAAAAAGACCACCATGGAAGATCACAGAAA
TGTCAACAAAAAGACATAAACGACAGTCTTGCAACAGTGGACAAATGGCAAACTATTTTTCCAAATCCCT
AGCATGCTACAAGTGA

Translation (1871 aa):
MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGLYGPRLRRDLS
LFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALF
RKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQEEQE
GPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENSVAGSTVDAKSEEATKMEKRKSALN
KVLESLCIHHQQQVLAMLKFLVQEQNAASLCCCNTSCVVSSESQKPLIEDDLCGLFCSCEYRLAERGCLQ
NEKQSPGLEPLPVCIKDLHCLSCQTVTVEHVKPVVNRGIADSYNSHRCCSGLLPNIHSTKSAFRSPLLSK
EVCDLSVTLKDACRSRSPSPPPLSPIETEGFEKLKDVISEISALENNKLEANINQPPSLTPAEISSNKSD
HQDKILKTKKSSNSYSLLSNDSNNSTTNHEKGETAVIFQDLMDRINEKLKSIETTDMTSLVKLSSSDYNT
YNDLKLGDFITSLLHNAKASDYSFMELLSQHDKKVENKIIQTRFRKRQETLFAMRNSSDSPMFRRQSLQI
KRELASLDENFTRKKYTEKSSRKLTQNNEISSSDKGEFYHDQGPSLQNSKRLQGKNHAETSFSPNYALQS
LQLPLHSSETNLSFNEFSESFKTTSPEKMSIRKPQEKSADGKQFLQNDRKNPKLGNTQTLLRNDVSGLLS
RTKRNIVPPGWYSVYVTNNYVFKKSPKAKKVSESTTKNDPVKNIHIESSHNIDLNKIAMNSNLQVVVKRL
EDTISIAKKSWNNQPLSEGYKASKKLIEIDGKDQHADRNMTLTLNRMTCKEQSLSKSVVASGNIINSHCM
PTVDLNNKRLENLKKSSILDMGRLISSVENVPAKYEGTESSSVSNYSSPIKLMFLSEVKSSEGVKYTLTS
VGTSHSNVVLPSEKPTTHHVTEEKTETNEDISNANSENYHSSHYDTDTFQRELNKFSHAKETAGSSTMFI
GDINSDKPQEEPKDNSSSATDPSFKRKPGRPKKIGPQVVKQIKRPIGRPPKPKIDQTNITVCQNEPFSAG
RKSPECLISEVKEGIYKKSITVTVIYGRSRRTKRHVSEGRVNISNLMSLNNNAGDFPTEYNSPRNISEDK
IDLGERISAVASLTTESEILGSGFEYVRPIKNKSVIPQPSKNIIRPNQKPLAISRKPGRPAKVKISGISV
TINRTSPQEREVSISSCLPPLEQDNTSGKNLPEEKYDQQCTQMDKIRHTEADIFKNGSKRMIATVPLRHS
IRDRKPSLHFLHSLASSSSLIYRNALLHKSYKLHLQKNKSQKEKHRHSKMKIAYKDTPRNRLSRNAKKCL
EDNKLVPISEVSLDPIISSNPLLRWWATSASNDSLLEELNNRFEQITNAWVQVSGDEAENCIHKKREHIE
NDHFKVASPLETCLLELEVSPVKMLFQKKYDLNELCTWFMQTTETQSLSLVRKANARNPLEVINTRGIKL
GTKYSDFNASPFRKHFKKFALSSPSKSAEKLHILHKVANSPLLNVKSNLAIARLKRTEFKRLHHERWKRE
GKLHNHGTVDWNSKRRNLRFFCQNQFLNKTEGETNADIPLQGKSIVDNQCVLPPEIRGDLQQRVVMPDFK
IHASFENKFKSEAKENGTNCSQKDFQKGPRLENVCPNSWRSKTLKDCRIFLRKLNCLEHRNTFKLNTIIY
SPESTDSGNTHQTHMEESKRFTLRSHSARQNSFKKQSKEIENANTNNPSADEFADHLGNSKLSKCVNFDK
NPDSFEVLSNLNKRKRPPWKITEMSTKRHKRQSCNSGQMANYFSKSLACYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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