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Report for CCDS93653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93653.1 Public Homo sapiens 4 TRIM2 24 110 108 CCDS HistoryNCBI Gene:23321Re-query CCDS DB by CCDS ID:93653.1Re-query CCDS DB by GeneID:23321See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93653.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000674935.1 ENSP00000501672.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674935.1Link to Ensembl Protein Viewer:ENSP00000501672.1Re-query CCDS DB by Nucleotide ID:ENST00000674935Re-query CCDS DB by Protein ID:ENSP00000501672
Original member Current member NCBI NM_001351054.2 NP_001337983.1 Accepted alive Link to Nucleotide Sequence:NM_001351054.2Link to Protein Sequence:NP_001337983.1Re-query CCDS DB by Nucleotide ID:NM_001351054Re-query CCDS DB by Protein ID:NP_001337983Link to BLAST:NP_001337983.1

Chromosomal Locations for CCDS 93653.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 153257605 153257607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153270335 153270519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153275893 153276130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153292982 153293133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153294305 153294485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153295313 153296036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153315485 153315588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153315832 153315999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153322648 153322828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153324078 153324148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153328530 153328670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153334814 153334966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGCAGCAGCGTGCAGGGTCAAAGACAGCCGGCCCCCCATGTCAGTGGTCTAGGATGGCCAGTGAAGGCA
CCAACATCCCAAGTCCTGTGGTGCGCCAGATTGACAAGCAGTTTCTGATTTGCAGTATATGCCTGGAACG
GTACAAGAATCCCAAGGTTCTCCCCTGTCTGCACACTTTCTGCGAGAGGTGCCTGCAGAACTACATTCCT
GCCCACAGTTTAACCCTCTCCTGCCCAGTGTGCCGCCAGACCTCCATCCTGCCCGAGAAAGGGGTGGCCG
CGCTCCAGAACAATTTCTTCATCACAAACCTGATGGACGTGCTGCAGCGAACTCCAGGCAGCAACGCTGA
GGAGTCTTCCATCCTGGAGACAGTCACTGCTGTGGCTGCGGGAAAGCCTCTCTCTTGCCCAAACCACGAT
GGGAATGTGATGGAATTTTACTGCCAGTCCTGTGAGACTGCCATGTGTCGGGAGTGCACGGAGGGGGAGC
ACGCAGAGCACCCCACAGTTCCACTCAAGGATGTGGTGGAACAGCACAAGGCCTCGCTCCAGGTCCAGCT
GGATGCTGTCAACAAAAGGCTCCCAGAAATAGATTCTGCTCTTCAGTTCATCTCTGAAATCATTCATCAG
TTAACCAACCAAAAGGCCAGCATCGTGGATGACATTCATTCCACCTTTGATGAGCTCCAGAAGACTTTAA
ATGTGCGCAAGAGTGTGCTGCTTATGGAATTGGAGGTCAACTATGGCCTCAAACACAAAGTCCTCCAGTC
GCAGCTGGATACTCTGCTCCAGGGGCAGGAGAGCATTAAGAGCTGCAGCAACTTCACAGCGCAGGCCCTC
AACCATGGCACGGAGACCGAGGTCCTACTGGTGAAGAAGCAGATGAGCGAGAAGCTGAACGAGCTGGCCG
ACCAGGACTTCCCCTTGCACCCGCGGGAGAACGACCAGCTGGATTTCATCGTGGAAACCGAGGGGCTGAA
GAAGTCCATCCACAACCTCGGGACGATCTTAACCACCAACGCCGTTGCCTCAGAGACAGTGGCCACGGGC
GAGGGGCTGCGGCAGACCATCATCGGGCAGCCCATGTCCGTCACCATCACCACCAAGGACAAAGACGGTG
AGCTGTGCAAAACCGGCAACGCCTACCTCACCGCCGAACTGAGCACCCCCGACGGGAGCGTGGCAGACGG
GGAGATCCTGGACAACAAGAACGGCACCTATGAGTTTTTGTACACTGTCCAGAAGGAAGGGGACTTTACC
CTGTCTCTGAGACTCTATGACCAGCACATCCGAGGCAGCCCGTTTAAGCTGAAAGTGATCCGATCCGCTG
ATGTGTCTCCCACCACAGAAGGCGTGAAGAGGCGCGTTAAGTCCCCGGGGAGCGGCCACGTCAAGCAGAA
AGCTGTGAAAAGACCCGCAAGCATGTACAGCACTGGAAAACGAAAAGAGAATCCCATCGAAGACGATTTG
ATCTTTCGAGTGGGTACCAAAGGAAGAAATAAAGGAGAGTTTACAAATCTTCAGGGGGTAGCTGCATCTA
CAAATGGAAAGATATTAATTGCAGACAGTAACAACCAATGTGTGCAGATATTTTCCAATGATGGCCAGTT
CAAAAGTCGTTTTGGCATACGGGGACGCTCTCCGGGGCAGCTGCAGCGGCCCACAGGAGTGGCTGTACAT
CCCAGTGGGGACATAATCATTGCCGATTATGATAATAAATGGGTCAGCATTTTCTCCTCCGATGGGAAAT
TTAAGACAAAAATTGGATCAGGAAAGCTGATGGGACCCAAAGGAGTTTCTGTGGACCGCAATGGGCACAT
TATTGTTGTGGACAACAAGGCGTGCTGCGTGTTTATCTTCCAGCCAAACGGGAAAATAGTCACCAGGTTT
GGTAGCCGAGGAAATGGGGACAGGCAGTTTGCAGGTACACTCGATGGTCCCCATTTTGCAGCTGTAAATA
GCAATAATGAGATTATTATTACAGATTTCCATAATCATTCTGTCAAGGTGTTTAATCAGGAAGGAGAATT
CATGTTGAAGTTTGGCTCAAATGGAGAAGGAAATGGGCAGTTTAATGCTCCAACAGGTGTAGCAGTGGAT
TCAAATGGAAACATCATTGTGGCCGACTGGGGAAACAGCAGGATCCAGGTTTTTGATGGGAGTGGATCAT
TTTTGTCCTACATTAACACATCTGCTGACCCACTCTATGGCCCCCAAGGCCTGGCCCTAACTTCAGATGG
TCATGTTGTGGTTGCAGACTCTGGAAATCACTGTTTCAAAGTCTATCGATACTTACAGTAA

Translation (766 aa):
MQQRAGSKTAGPPCQWSRMASEGTNIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIP
AHSLTLSCPVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHD
GNVMEFYCQSCETAMCRECTEGEHAEHPTVPLKDVVEQHKASLQVQLDAVNKRLPEIDSALQFISEIIHQ
LTNQKASIVDDIHSTFDELQKTLNVRKSVLLMELEVNYGLKHKVLQSQLDTLLQGQESIKSCSNFTAQAL
NHGTETEVLLVKKQMSEKLNELADQDFPLHPRENDQLDFIVETEGLKKSIHNLGTILTTNAVASETVATG
EGLRQTIIGQPMSVTITTKDKDGELCKTGNAYLTAELSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFT
LSLRLYDQHIRGSPFKLKVIRSADVSPTTEGVKRRVKSPGSGHVKQKAVKRPASMYSTGKRKENPIEDDL
IFRVGTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAVH
PSGDIIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTRF
GSRGNGDRQFAGTLDGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVD
SNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGPQGLALTSDGHVVVADSGNHCFKVYRYLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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