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Report for CCDS93780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93780.1 Public Homo sapiens 5 SHROOM1 24 110 108 CCDS HistoryNCBI Gene:134549Re-query CCDS DB by CCDS ID:93780.1Re-query CCDS DB by GeneID:134549See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378676.1 ENSP00000367947.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378676.1Link to Ensembl Protein Viewer:ENSP00000367947.1Re-query CCDS DB by Nucleotide ID:ENST00000378676Re-query CCDS DB by Protein ID:ENSP00000367947
Current member NCBI NM_001410779.1 NP_001397708.1 Accepted alive Link to Nucleotide Sequence:NM_001410779.1Link to Protein Sequence:NP_001397708.1Re-query CCDS DB by Nucleotide ID:NM_001410779Re-query CCDS DB by Protein ID:NP_001397708Link to BLAST:NP_001397708.1

Chromosomal Locations for CCDS 93780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132822796 132823128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823250 132823522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823623 132823764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132823850 132824419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132825018 132825073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132825163 132826140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGGAGGCCCTGGGACCTGGGGGCGACCGCGCCTCCCCGGCCTCGTCCACTAGCAGCCTGGACCTGTGGC
ATCTGTCCATGCGCGCGGACTCGGCCTACAGCTCTTTCTCCGCAGCCTCCGGCGGCCCCGAGCCGCGCAC
GCAGTCGCCGGGGACAGACCTCCTTCCTTACCTAGACTGGGACTACGTGCGTGTGGTTTGGGGCGGCCCG
GGCCCCGCCCCGCCCGACGCTGCCCTTTGCACATCCCCGCGGCCCCGGCCCGCGGTTGCAGCCCGCAGTG
GGCCGCAGCCAACAGAGGTCCCGGGGACCCCGGGACCACTGAACAGGCAGGCCACCCCGCTGCTGTACGC
GCTGGCGGCCGAGGCGGAGGCCGCGGCGCAGGCTGCCGAGCCGCCCAGCCCGCCGGCCTCGAGGGCCGCC
TACCGCCAGCGGCTTCAGGGCGCGCAGCGGCGAGTGCTCCGGGAGACGTCGTTCCAGCGCAAGGAGCTCC
GCATGAGCCTGCCCGCCCGTCTGCGGCCCACTGTCCCAGCGCGGCCCCCGGCGACTCACCCGCGCTCCGC
CTCGCTCAGCCACCCGGGCGGGGAGGGGGAGCCGGCGCGCTCCCGGGCTCCCGCGCCAGGAACTGCCGGC
CGGGGTCCCCTCGCCAACCAGCAGCGGAAGTGGTGCTTCTCAGAGCCAGGAAAGCTGGATCGTGTGGGTC
GGGGCGGTGGGCCGGCGCGGGAATGCCTGGGTGAGGCCTGCTCCAGCTCTGGCCTCCCTGGGCCCGAGCC
CTTGGAGTTCCAGCATCCGGCGCTGGCTAAGTTTGAAGATCACGAGGTCGGATGGCTGCCCGAGACGCAA
CCCCAAGGCTCCATGAACCTGGACTCCGGGTCCTTGAAGCTCGGTGATGCCTTCAGGCCCGCCAGTCGGA
GTCGGAGCGCTTCAGGCGAAGTCTTGGGTTCCTGGGGAGGATCAGGAGGGACCATACCCATTGTCCAGGC
TGTTCCCCAAGGAGCAGAAACCCCCAGACCATTGTTTCAGACCAAACTTTCCAGTGTCCATGCCTCTGAC
CAGCCGTATGGAACTGGCTTAGGCCAAAGAACTGGCCAGGTTACAGTCCCCACAGAGTACCCGCTCCATG
AGTGTCCAGGAACTGCAGGGGCAGATGACTGCTGGCAGGGGGTGAATGGTTCTGTAGGTATTTCCAGGCC
CACAAGCCACACCCCCACTGGGACTGCAAATGATAACATCCCAACTATTGACCCCACTGGACTGACCACC
AATCCCCCCACAGCTGCAGAGAGTGACCTCCTCAAACCTGTCCCAGCTGATGCCTTGGGACTTTCAGGCA
ATGATACTCCAGGTCCCTCTCACAATACTGCCCTAGCCAGGGGCACTGGCCAGCCTGGTTCCAGGCCCAC
ATGGCCTAGTCAGTGCCTCGAGGAGCTGGTTCAGGAGCTGGCCAGATTAGATCCCTCTCTATGTGACCCT
CTTGCTTCCCAGCCCAGCCCAGAGCCACCCCTGGGCCTGCTGGATGGACTGATTCCTTTAGCAGAGGTCC
GGGCTGCAATGCGGCCTGCCTGTGGGGAGGCTGGAGAGGAGGCTGCCAGTACTTTTGAGCCAGGGTCCTA
TCAGTTCAGCTTCACCCAGCTCCTGCCGGCTCCTCGGGAGGAGACAAGGCTTGAAAACCCTGCCACCCAC
CCTGTGCTTGACCAGCCATGTGGGCAGGGGCTCCCTGCACCAAACAACAGCATCCAGGGCAAGAAAGTGG
AGCTGGCCGCCCGCCTCCAAAAGATGCTTCAGGACCTTCACACGGAGCAGGAGCGGCTGCAGGGGGAGGC
ACAAGCGTGGGCCAGGCGCCAAGCGGCTCTGGAGGCTGCAGTGCGCCAGGCCTGTGCCCCTCAGGAGCTG
GAGCGGTTCAGCCGGTTCATGGCCGACCTAGAGCGCGTGCTTGGCCTTCTGCTGCTGCTGGGCAGTCGCC
TGGCGCGCGTGCGCCGCGCCCTGGCCCGGGCGGCCTCAGACAGCGACCCTGATGAGCAGGCCTCCCTGCT
GCAGCGACTCCGGCTCCTGCAGCGGCAGGAGGAGGACGCCAAGGAGCTGAAGGAGCACGTAGCGCGGCGC
GAGCGGGCCGTGCGGGAGGTGCTGGTGCGAGCACTACCGGTGGAGGAGCTGCGCGTCTATTGCGCCCTGC
TGGCGGGCAAGGCCGCCGTCCTGGCCCAGCAGCGCAACCTGGACGAGCGCATCCGCCTCCTTCAGGACCA
ACTGGACGCCATCAGGGACGACCTTGGCCATCATGCCCCGTCTCCCAGCCCGGCGCGGCCCCCAGGGACC
TGTCCTCCAGTTCAGCCGCCCTTCCCTCTTCTCCTTACATAG

Translation (783 aa):
MEALGPGGDRASPASSTSSLDLWHLSMRADSAYSSFSAASGGPEPRTQSPGTDLLPYLDWDYVRVVWGGP
GPAPPDAALCTSPRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAAEAEAAAQAAEPPSPPASRAA
YRQRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPPATHPRSASLSHPGGEGEPARSRAPAPGTAG
RGPLANQQRKWCFSEPGKLDRVGRGGGPARECLGEACSSSGLPGPEPLEFQHPALAKFEDHEVGWLPETQ
PQGSMNLDSGSLKLGDAFRPASRSRSASGEVLGSWGGSGGTIPIVQAVPQGAETPRPLFQTKLSSVHASD
QPYGTGLGQRTGQVTVPTEYPLHECPGTAGADDCWQGVNGSVGISRPTSHTPTGTANDNIPTIDPTGLTT
NPPTAAESDLLKPVPADALGLSGNDTPGPSHNTALARGTGQPGSRPTWPSQCLEELVQELARLDPSLCDP
LASQPSPEPPLGLLDGLIPLAEVRAAMRPACGEAGEEAASTFEPGSYQFSFTQLLPAPREETRLENPATH
PVLDQPCGQGLPAPNNSIQGKKVELAARLQKMLQDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQEL
ERFSRFMADLERVLGLLLLLGSRLARVRRALARAASDSDPDEQASLLQRLRLLQRQEEDAKELKEHVARR
ERAVREVLVRALPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQLDAIRDDLGHHAPSPSPARPPGT
CPPVQPPFPLLLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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