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Report for CCDS93788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93788.1 Public Homo sapiens 5 FAM13B 24 110 108 CCDS HistoryNCBI Gene:51306Re-query CCDS DB by CCDS ID:93788.1Re-query CCDS DB by GeneID:51306See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000689681.1 ENSP00000509788.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000689681.1Link to Ensembl Protein Viewer:ENSP00000509788.1Re-query CCDS DB by Nucleotide ID:ENST00000689681Re-query CCDS DB by Protein ID:ENSP00000509788
Original member Current member NCBI NM_001385994.1 NP_001372923.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385994.1Link to Protein Sequence:NP_001372923.1Re-query CCDS DB by Nucleotide ID:NM_001385994Re-query CCDS DB by Protein ID:NP_001372923Link to BLAST:NP_001372923.1

Chromosomal Locations for CCDS 93788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137940225 137940348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137941944 137942045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137942875 137943038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137943133 137943216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137945902 137945997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137946228 137946311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137948955 137949184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137952628 137952709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137953336 137953465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137954166 137954376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137956477 137956542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137959616 137959763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137960166 137960214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137962405 137962469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137985257 137985389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137987461 137987616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137988274 137988315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138006990 138007147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138011008 138011149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138011768 138011945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138018302 138018514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138018955 138019111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2814 nt):
ATGAGGAAGAGCTCCTCCCCTTCCTTGAGTAACTGCAACTCCGTTCTTGCTAACAAAATATTTGGAATTC
CACTTGATGAGCTGCAGCAGGGAGGACATCCAGACAATGAGGTTCCATTCATAGTCCGCCACGTTGTGGA
CTATATTGAGGAACATGGAGGTCTGGAGCAACAAGGACTTTTTCAAGTCAATGGAAATGCTGAGACAGTG
GAGTGGCTTCGGCAGAGATACGACAGCGGAGAAGAGGTGGATTTGGTTAAGGAAGCAGATGTTCCCTCAG
CTATTAGCCTTCTTAGATTTTTTCTTCAAGAACTTCCTGAACCTGTTATCCCTGGCAGTTTACATATTCA
CTTGATGCAGCTTTCTCAAGATTATAATAATGAAGATGAATTTGGAAGAAAGTTGAGGTTCCTCTTGCAA
CAGCTTCCACCTGTTAATTATAGTTTGTTAAAGTTTCTGTGTAGATTTTTAGCCAATGTAGCATCACATC
ATGAAGAAATTTGGTCCGCAAATTCTTTGGCTGCTGTCTTTGGTCCAGATGTCTTCCACATTTACACAGA
TGTGGAAGACATGAAAGAGCAAGAAATAGTGAGCAGGATAATGGCTGGACTTCTGGAAAACTACTATGAG
TTTTTTGAGAATGAAGAGGAAGATTTTTCATCTAATGATTTGAGTTCAATTACTGAACAGGTTAATGAAC
TTTCTGAGGAAGAAGAGGAAGATGAAAAGCTGGAACATATTGAAGAACTTCCAGAAGAGGGTGCAGAAAA
ATCAAATGACATGCCAGAGGTGGTACAATTAAGGATGACTGAAAACATCCTGGAATCAAATAGTGTTACG
GCAACAAGCACCCATATATCTCCCATCAGCATCCTACCAGCCTCTACAGATATTTTAGAAAGAACAATTA
GAGCAGCTGTGGAACAGCACCTTTTTGATCTTCAGAGCAGCATAGATCATGATCTTAAGAATTTACAACA
GCAAAGTGTGGTGTGTAATAATGAAGCAGAAAGTATTCATTGTGATGGGGAAGGATCTAATAACCAGATT
GATATTGCTGATGATATTATTAATGCCAGTGAAAGTAACAGAGACTGTTCAAAACCTGTGGCTAGCACTA
ATTTAGACAATGAAGCTATGCAGCAAGATTGTGTATTTGAGAATGAAGAAAATACCCAGTCTGTAGGTAT
ATTGTTAGAGCCATGCAGTGACCGTGGTGATAGTGAAGATGGCTGTCTTGAGAGGGAAGAATATTTGTTA
TTTGACAGTGATAAATTGTCACACTTGATTCTGGATTCTAGTAGCAAGATATGTGATTTGAATGCCAACA
CTGAATCAGAAGTACCAGGAGGTCAGAGTGTTGGTGTTCAAGGGGAAGCAGCGTGTGTCAGTATTCCACA
TTTAGATCTGAAGAATGTTTCTGATGGTGATAAATGGGAAGCGTCATGCCCTATCACTTTTCCCCTCATT
GATTTCAAAACAATGCATCTGCAGAGAGATGGGGAGGAGCCATTTCCTGCTTTTAAGTCTTGGCAGGAGG
ACTCTGAGTCTGGAGAAGCTCAGCTGTCTCCACAAGCTGGAAGAATGAATCATCACCCCTTGGAAGAGGA
CTGTCCTCCAGTATTATCACACCGCAGTTTAGATTTTGGTCAAAGCCAGCGTTTCCTACATGATCCAGAA
AAGTTGGATTCCTCATCTAAAGCACTGTCTTTTACTAGAATTCGAAGATCATCCTTTAGTTCAAAAGATG
AAAAGAGAGAGGACAGAACACCTTATCAGCTGGTCAAGAAACTTCAGAAGAAAATCAGACAATTTGAGGA
ACAGTTTGAAAGGGAAAGAAATAGCAAGCCCTCCTACAGTGATATTGCTGCCAATCCAAAGGTATTAAAA
TGGATGACAGAGCTTACAAAACTGCGGAAGCAAATTAAAGATGCAAAACACAAAAATTCTGATGGAGAAT
TTGTACCTCAGACACGTCCACGTAGTAACACACTTCCAAAAAGCTTTGGCTCTTCTCTAGACCATGAAGA
TGAAGAGAATGAAGATGAACCCAAGGTCATTCAGAAGGAGAAAAAACCATCTAAAGAAGCAACCCTTGAA
CTTATTCTTAAAAGACTGAAAGAAAAACGTATTGAGAGGTGTCTTCCAGAAGATATCAAGAAAATGACCA
AAGATCATTTGGTAGAAGAGAAAGCTTCTCTTCAGAAAAGTCTTCTTTACTATGAAAGTCAACATGGAAG
GCCGGTGACCAAGGAAGAAAGGCACATTGTTAAACCTCTCTATGATAGATACAGGCTTGTAAAACAAATG
CTGACAAGAGCTAGCATCACTCCTGTCCTTGGATCTCCATCCACCAAGCGAAGGGGTCAGATGTTACAGC
CAATCATAGAAGGAGAAACTGCACATTTTTTTGAAGAAATCAAGGAGGAAGAAGAAGATGGTGTTAATCT
GTCCTCTGAGTTAGGTGATATGTTGAAAACTGCAGTACAGGTACAGTCTTCATTAGAAAACTCTGAATCT
GATGTTGAAGAAAATCAAGAAAAACTGGCTCTGGATCTCCGATTGTCAAGTTCTCGAGCAGCTTCTATGC
CTGAATTATTGGAACAACTTTGGAAAGCCAGAGCTGAAAAAAAGAAACTACGCAAAACGTTGCGGGAATT
TGAAGAAGCATTTTATCAACAAAATGGAAGGAATGCCCAGAAAGAGGATCGTGTTCCAGTGCTTGAGGAG
TACAGAGAGTACAAGAAAATTAAAGCCAAGCTTAGGCTTCTTGAAGTTCTTATAAGCAAACAAGATTCTT
CAAAATCCATATAA

Translation (937 aa):
MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETV
EWLRQRYDSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMQLSQDYNNEDEFGRKLRFLLQ
QLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDMKEQEIVSRIMAGLLENYYE
FFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEELPEEGAEKSNDMPEVVQLRMTENILESNSVT
ATSTHISPISILPASTDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSVVCNNEAESIHCDGEGSNNQI
DIADDIINASESNRDCSKPVASTNLDNEAMQQDCVFENEENTQSVGILLEPCSDRGDSEDGCLEREEYLL
FDSDKLSHLILDSSSKICDLNANTESEVPGGQSVGVQGEAACVSIPHLDLKNVSDGDKWEASCPITFPLI
DFKTMHLQRDGEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPE
KLDSSSKALSFTRIRRSSFSSKDEKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLK
WMTELTKLRKQIKDAKHKNSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEPKVIQKEKKPSKEATLE
LILKRLKEKRIERCLPEDIKKMTKDHLVEEKASLQKSLLYYESQHGRPVTKEERHIVKPLYDRYRLVKQM
LTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVNLSSELGDMLKTAVQVQSSLENSES
DVEENQEKLALDLRLSSSRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEE
YREYKKIKAKLRLLEVLISKQDSSKSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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