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Report for CCDS93828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93828.1 Public Homo sapiens 5 HRH2 24 110 108 CCDS HistoryNCBI Gene:3274Re-query CCDS DB by CCDS ID:93828.1Re-query CCDS DB by GeneID:3274See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636584.2 ENSP00000489742.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000636584.2Link to Ensembl Protein Viewer:ENSP00000489742.1Re-query CCDS DB by Nucleotide ID:ENST00000636584Re-query CCDS DB by Protein ID:ENSP00000489742
Original member Current member NCBI NM_001367711.1 NP_001354640.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001367711.1Link to Protein Sequence:NP_001354640.1Re-query CCDS DB by Nucleotide ID:NM_001367711Re-query CCDS DB by Protein ID:NP_001354640Link to BLAST:NP_001354640.1
Original member Current member NCBI NM_001393460.1 NP_001380389.1 Accepted alive Link to Nucleotide Sequence:NM_001393460.1Link to Protein Sequence:NP_001380389.1Re-query CCDS DB by Nucleotide ID:NM_001393460Re-query CCDS DB by Protein ID:NP_001380389Link to BLAST:NP_001380389.1
Original member Current member NCBI NM_001393461.1 NP_001380390.1 Accepted alive Link to Nucleotide Sequence:NM_001393461.1Link to Protein Sequence:NP_001380390.1Re-query CCDS DB by Nucleotide ID:NM_001393461Re-query CCDS DB by Protein ID:NP_001380390Link to BLAST:NP_001380390.1

Chromosomal Locations for CCDS 93828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 175683234 175684309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175707779 175707971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGCACCCAATGGCACAGCCTCTTCCTTTTGCCTGGACTCTACCGCATGCAAGATCACCATCACCGTGG
TCCTTGCGGTCCTCATCCTCATCACCGTTGCTGGCAATGTGGTCGTCTGTCTGGCCGTGGGCTTGAACCG
CCGGCTCCGCAACCTGACCAATTGTTTCATCGTGTCCTTGGCTATCACTGACCTGCTCCTCGGCCTCCTG
GTGCTGCCCTTCTCTGCCATCTACCAGCTGTCCTGCAAGTGGAGCTTTGGCAAGGTCTTCTGCAATATCT
ACACCAGCCTGGATGTGATGCTCTGCACAGCCTCCATTCTTAACCTCTTCATGATCAGCCTCGACCGGTA
CTGCGCTGTCATGGACCCACTGCGGTACCCTGTGCTGGTCACCCCAGTTCGGGTCGCCATCTCTCTGGTC
TTAATTTGGGTCATCTCCATTACCCTGTCCTTTCTGTCTATCCACCTGGGGTGGAACAGCAGGAACGAGA
CCAGCAAGGGCAATCATACCACCTCTAAGTGCAAAGTCCAGGTCAATGAAGTGTACGGGCTGGTGGATGG
GCTGGTCACCTTCTACCTCCCGCTACTGATCATGTGCATCACCTACTACCGCATCTTCAAGGTCGCCCGG
GATCAGGCCAAGAGGATCAATCACATTAGCTCCTGGAAGGCAGCCACCATCAGGGAGCACAAAGCCACAG
TGACACTGGCCGCCGTCATGGGGGCCTTCATCATCTGCTGGTTTCCCTACTTCACCGCGTTTGTGTACCG
TGGGCTGAGAGGGGATGATGCCATCAATGAGGTGTTAGAAGCCATCGTTCTGTGGCTGGGCTATGCCAAC
TCAGCCCTGAACCCCATCCTGTATGCTGCGCTGAACAGAGACTTCCGCACCGGGTACCAACAGCTCTTCT
GCTGCAGGCTGGCCAACCGCAACTCCCACAAAACTTCTCTGAGGTCCAACGCCTCTCAGCTGTCCAGGAC
CCAAAGCCGAGAACCCAGGCAACAGGAAGAGAAACCCCTGAAGCTCCAGGTGTGGAGTGGGACAGAAGTC
ACGGCCCCCCAGGGAGCCACAGACAGGAAGCCAGCACTGTCCTGCACTACGTGCTCCAGCAACCTCCTGA
GCTGCTGCAAGAGCCTGTGGGGGCTCAGGTTCCTTCAGAGACACATGGGAGGCCCCTCGGAGGAGCTATC
GGGGGAGCCACTGTCTGAGGAGCCACAGAAGAGACCTCCCCAGAAAGCGGTGAGGACGCTGCCCTCTGAG
GCTGTCTAG

Translation (422 aa):
MAPNGTASSFCLDSTACKITITVVLAVLILITVAGNVVVCLAVGLNRRLRNLTNCFIVSLAITDLLLGLL
VLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLDRYCAVMDPLRYPVLVTPVRVAISLV
LIWVISITLSFLSIHLGWNSRNETSKGNHTTSKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVAR
DQAKRINHISSWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYAN
SALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEV
TAPQGATDRKPALSCTTCSSNLLSCCKSLWGLRFLQRHMGGPSEELSGEPLSEEPQKRPPQKAVRTLPSE
AV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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