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Report for CCDS93859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93859.1 Public Homo sapiens 6 PHACTR1 24 110 108 CCDS HistoryNCBI Gene:221692Re-query CCDS DB by CCDS ID:93859.1Re-query CCDS DB by GeneID:221692See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000687600.1 ENSP00000509410.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687600.1Link to Ensembl Protein Viewer:ENSP00000509410.1Re-query CCDS DB by Nucleotide ID:ENST00000687600Re-query CCDS DB by Protein ID:ENSP00000509410
Original member Current member NCBI NM_001322313.2 NP_001309242.1 Accepted alive Link to Nucleotide Sequence:NM_001322313.2Link to Protein Sequence:NP_001309242.1Re-query CCDS DB by Nucleotide ID:NM_001322313Re-query CCDS DB by Protein ID:NP_001309242Link to BLAST:NP_001309242.1

Chromosomal Locations for CCDS 93859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13053391 13053529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13160204 13160284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13182519 13182686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13184799 13185005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13205815 13206136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13227816 13228063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13230037 13230193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13272860 13272915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13278268 13278329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13283422 13283562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13286146 13286222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13287063 13287078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGCGTTCTGACTCCCTCGTCCCAGGCACCCACACCCCACCCATCCGCAGGAGAAGTAAGTTTGCCAACC
TGGGAAGGATTTTCAAGCCTTGGAAATGGAGGAAGAAGAAAAGCGAAAAGTTCAAACACACGTCAGCAGC
CCTGGAAAGGAAAATATCTATGAGGCAAAGCAGAGAAGAGCTGATAAAGCGAGGAGTCCTGAAGGAAATC
TATGATAAAGATGGGGAACTCTCTATATCCAATGAAGAGGACTCCCTAGAAAATGGGCAGTCCCTGAGCT
CCAGCCAGCTGTCTCTGCCTGCCCTGTCCGAAATGGAGCCAGTCCCAATGCCCAGGGATCCCTGCTCATA
TGAGGTGCTCCAACCGTCAGACATCATGGATGGGCCAGTGTCTGAAGAGAGTCCCTCTGCCAGTGAGTCT
GGAGTCCTCCTGTCCCAAGATCCTTCAGCCAAACCAGTCCTGCTACTGCCCCCCAAAAAACCTGCTGCTT
TCCCTGGAGACCATGAAGAGACCCCAGTGAAGCAGCTGCCCCTTCTCAAGCAGCCCCCGGCCCTGCCTCC
CAAACCCACTACCAGGATTGCCAACCACTTAACAGATCCTGGCGCCCCTGTGAAATTGCCTTGTCTGCCA
GTGAAACTGTCGCCTCCGCTACCTCCAAAGAAAGTCATGATCTGTATGCCCGTGGGGGGGCCAGACCTCT
CACTGGTGTCCTACACAGCCCAGAAGAGTGGCCAGCAGGGTGTGGCCCAGCACCACCACACTGTCCTGCC
CTCCCAGATCCAGCACCAGCTGCAGTACGGCAGCCACGGCCAGCACCTCCCCTCCACCACCGGCTCCCTC
CCCATGCACCCCTCGGGCTGCAGAATGATAGACGAGCTCAACAAAACGCTGGCCATGACCATGCAGAGGC
TGGAAAGCTCTGAGCAGCGGGTCCCCTGTTCCACTTCTTACCACAGCTCTGGGTTGCACTCGGGTGATGG
GGTCACCAAAGCAGGACCTATGGGCCTTCCAGAAATAAGACAAGTGCCAACTGTTGTGATTGAATGTGAT
GACAATAAAGAAAATGTGCCTCATGAGTCAGACTACGAAGACTCTTCTTGCCTGTATACAAGAGAAGAGG
AGGAAGAGGAGGAGGACGAAGACGACGACAGCTCATTATACACCAGCTCCCTGGCCATGAAGGTCTGCAG
GAAGGACTCCTTAGCCATCAAACTCAGCAACAGGCCCTCCAAGCGAGAGCTGGAAGAAAAGAACATCCTT
CCCAGGCAGACGGATGAGGAGCGGCTGGAGCTGAGGCAACAGATTGGCACCAAGCTCACCAGGCGGCTGA
GCCAGAGGCCAACTGCAGAGGAACTGGAACAGAGGAACATTTTGAAACCTCGGAATGAACAAGAGGAACA
GGAGGAGAAGAGAGAGATCAAGAGGAGGCTAACCCGAAAGCTCAGTCAAAGGCCCACGGTGGAAGAGCTT
CGGGAAAGAAAGATCCTCATCCGCTTCAGTGACTACGTGGAGGTGGCTGACGCTCAGGACTATGACCGCA
GGGCAGATAAGCCGTGGACCCGCCTCACCGCTGCAGACAAAGCTGCCATCCGAAAGGAGCTCAATGAATT
CAAAAGCACTGAGATGGAAGTTCATGAATTGAGTAGACACTTAACAAGGTTTCACCGACCTTAA

Translation (557 aa):
MRSDSLVPGTHTPPIRRRSKFANLGRIFKPWKWRKKKSEKFKHTSAALERKISMRQSREELIKRGVLKEI
YDKDGELSISNEEDSLENGQSLSSSQLSLPALSEMEPVPMPRDPCSYEVLQPSDIMDGPVSEESPSASES
GVLLSQDPSAKPVLLLPPKKPAAFPGDHEETPVKQLPLLKQPPALPPKPTTRIANHLTDPGAPVKLPCLP
VKLSPPLPPKKVMICMPVGGPDLSLVSYTAQKSGQQGVAQHHHTVLPSQIQHQLQYGSHGQHLPSTTGSL
PMHPSGCRMIDELNKTLAMTMQRLESSEQRVPCSTSYHSSGLHSGDGVTKAGPMGLPEIRQVPTVVIECD
DNKENVPHESDYEDSSCLYTREEEEEEEDEDDDSSLYTSSLAMKVCRKDSLAIKLSNRPSKRELEEKNIL
PRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIKRRLTRKLSQRPTVEEL
RERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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